BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0909 (354 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 27 0.64 SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||... 26 2.0 SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 3.4 SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 25 4.5 SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 24 7.9 >SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccharomyces pombe|chr 3|||Manual Length = 466 Score = 27.5 bits (58), Expect = 0.64 Identities = 15/28 (53%), Positives = 17/28 (60%) Frame = +1 Query: 61 PSS*YRPWLSSVCNHLPA*TLQTPQNLN 144 PS RP LSSV +LP + TP NLN Sbjct: 275 PSPYSRPLLSSVHPNLPPGSQSTPANLN 302 >SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 280 Score = 25.8 bits (54), Expect = 2.0 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -1 Query: 345 PSGEVDSDTDDTGNETQGGKPSKLL 271 P+G V D DD G G + S LL Sbjct: 198 PNGNVIQDNDDDGESAAGSRMSHLL 222 >SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 2|||Manual Length = 3699 Score = 25.0 bits (52), Expect = 3.4 Identities = 14/58 (24%), Positives = 29/58 (50%) Frame = -3 Query: 286 AFEASEARNETRYDDILSIRSGRSNRSRASTATVGSKYKTGGKGIHRNLDSAASVAST 113 A++++ R +DILSI+S + ++++ A +K K + +D S+ T Sbjct: 3118 AWKSNTTDENKRNEDILSIQSNFLSTNQSTNAPATNKEDGLSKKVWEYIDEIMSILKT 3175 >SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 791 Score = 24.6 bits (51), Expect = 4.5 Identities = 14/50 (28%), Positives = 25/50 (50%) Frame = -3 Query: 265 RNETRYDDILSIRSGRSNRSRASTATVGSKYKTGGKGIHRNLDSAASVAS 116 RN+++ DD+ + S S AST+ V ++ + R+LD + S Sbjct: 428 RNDSKSDDVGNSTHRFSTASAASTSAVKTEKEKKMSAPRRSLDKLIRIGS 477 >SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 579 Score = 23.8 bits (49), Expect = 7.9 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = +1 Query: 262 SGLQKLRRLAALGFVACVIGVRINFAAGL 348 SG +K+RR A+G G I GL Sbjct: 164 SGTRKMRRRIAMGLAGLAGGALIGLTGGL 192 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,019,718 Number of Sequences: 5004 Number of extensions: 14167 Number of successful extensions: 37 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 37 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 105935336 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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