Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0909
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    27   0.64 
SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||...    26   2.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   3.4  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   4.5  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    24   7.9  

>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +1

Query: 61  PSS*YRPWLSSVCNHLPA*TLQTPQNLN 144
           PS   RP LSSV  +LP  +  TP NLN
Sbjct: 275 PSPYSRPLLSSVHPNLPPGSQSTPANLN 302


>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 280

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 345 PSGEVDSDTDDTGNETQGGKPSKLL 271
           P+G V  D DD G    G + S LL
Sbjct: 198 PNGNVIQDNDDDGESAAGSRMSHLL 222


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = -3

Query: 286  AFEASEARNETRYDDILSIRSGRSNRSRASTATVGSKYKTGGKGIHRNLDSAASVAST 113
            A++++      R +DILSI+S   + ++++ A   +K     K +   +D   S+  T
Sbjct: 3118 AWKSNTTDENKRNEDILSIQSNFLSTNQSTNAPATNKEDGLSKKVWEYIDEIMSILKT 3175


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 265 RNETRYDDILSIRSGRSNRSRASTATVGSKYKTGGKGIHRNLDSAASVAS 116
           RN+++ DD+ +     S  S AST+ V ++ +       R+LD    + S
Sbjct: 428 RNDSKSDDVGNSTHRFSTASAASTSAVKTEKEKKMSAPRRSLDKLIRIGS 477


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 262 SGLQKLRRLAALGFVACVIGVRINFAAGL 348
           SG +K+RR  A+G      G  I    GL
Sbjct: 164 SGTRKMRRRIAMGLAGLAGGALIGLTGGL 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,019,718
Number of Sequences: 5004
Number of extensions: 14167
Number of successful extensions: 37
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)