Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0909
         (354 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973...    28   2.4  
10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175     27   3.2  
06_03_0828 + 25137782-25138312,25141349-25141588                       27   4.2  
07_03_1734 + 29120474-29120705,29120839-29120949,29121854-291219...    27   5.6  
06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960,242...    27   5.6  
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476     26   7.4  
01_03_0137 - 12904727-12904981,12907192-12907605                       26   7.4  
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785...    26   9.8  

>01_01_1208 +
           9733010-9733114,9733920-9733979,9735254-9736280,
           9736332-9736621
          Length = 493

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -1

Query: 348 KPSG--EVDSDTDDTGNETQGGKPSKLLK 268
           +P G  E+DS T+D   E  G  P K+LK
Sbjct: 100 RPDGRIEIDSMTEDVKTEPDGSVPEKILK 128


>10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175
          Length = 294

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 105 PPSVDATDAAESKFLCIPFPPVLYLEP 185
           PP  DAT   E    C PF P+ ++EP
Sbjct: 209 PPPSDAT-GGEVSIPCFPFSPLPFIEP 234


>06_03_0828 + 25137782-25138312,25141349-25141588
          Length = 256

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = -3

Query: 277 ASEARNETRYDDILSIRSGRSNRSRASTATVGSKYKTGG---KGIHRNLDSAASVASTLG 107
           A E R      +I   RSG + RS AST +   +  TGG   +G    L++    A   G
Sbjct: 97  AEERRGGAASREIAMRRSGVAARSAASTHSTPWRRTTGGRWARGGGGRLEAGGGAAEEAG 156

Query: 106 GDYR 95
           G  R
Sbjct: 157 GGER 160


>07_03_1734 +
           29120474-29120705,29120839-29120949,29121854-29121966,
           29122119-29124128
          Length = 821

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 105 PPSVDATDAAESKFLCIPFPPVLYLE 182
           PPS+ + DAA +K+  IP P +L  E
Sbjct: 221 PPSLSSPDAANNKYSEIPNPLILMNE 246


>06_01_0336 +
           2427017-2427121,2427585-2427662,2427889-2427960,
           2428105-2428671,2428822-2428935,2431308-2432246
          Length = 624

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 345 PSGEVDSDTDDTGNETQGGKPSKLLK 268
           P G  +   DDT   T+   PSK+LK
Sbjct: 215 PEGSFEDARDDTAETTEQWPPSKMLK 240


>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
          Length = 676

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 274 SEARNETRYDDILSIRSG-RSNRSRASTATVGSKYKTGGKGIHRNLDSAAS 125
           S+ R   R DD    R G  S+ SR+ +    S  +  G+G+HR    AA+
Sbjct: 145 SDMRCPRRGDDSSMERGGGSSSSSRSLSREPSSAVQERGRGLHRGASPAAA 195


>01_03_0137 - 12904727-12904981,12907192-12907605
          Length = 222

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 336 EVDSDTDDTGNETQGGKPSK 277
           E D D DD G++   G+PSK
Sbjct: 202 EDDDDDDDDGDDDDDGRPSK 221


>04_04_1250 +
           32077590-32078000,32078132-32078308,32078437-32078561,
           32078629-32078761,32078866-32079015,32079105-32079158,
           32079437-32079532,32080021-32080095,32080723-32080824,
           32080903-32081589,32081686-32081817,32081916-32082023,
           32082170-32082319
          Length = 799

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 280 EASEARNETRYDDILSIRSGRSNRSRASTATVGSKYKTGG 161
           EA   R  T+ + +  +++GR +R +    T   + KTGG
Sbjct: 714 EAHIKRKLTKEERLEMVKAGREDRGKYQARTAVKQKKTGG 753


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,194,220
Number of Sequences: 37544
Number of extensions: 112850
Number of successful extensions: 403
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)