BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0909 (354 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973... 28 2.4 10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175 27 3.2 06_03_0828 + 25137782-25138312,25141349-25141588 27 4.2 07_03_1734 + 29120474-29120705,29120839-29120949,29121854-291219... 27 5.6 06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960,242... 27 5.6 04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 26 7.4 01_03_0137 - 12904727-12904981,12907192-12907605 26 7.4 04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 26 9.8 >01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280, 9736332-9736621 Length = 493 Score = 27.9 bits (59), Expect = 2.4 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = -1 Query: 348 KPSG--EVDSDTDDTGNETQGGKPSKLLK 268 +P G E+DS T+D E G P K+LK Sbjct: 100 RPDGRIEIDSMTEDVKTEPDGSVPEKILK 128 >10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175 Length = 294 Score = 27.5 bits (58), Expect = 3.2 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +3 Query: 105 PPSVDATDAAESKFLCIPFPPVLYLEP 185 PP DAT E C PF P+ ++EP Sbjct: 209 PPPSDAT-GGEVSIPCFPFSPLPFIEP 234 >06_03_0828 + 25137782-25138312,25141349-25141588 Length = 256 Score = 27.1 bits (57), Expect = 4.2 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Frame = -3 Query: 277 ASEARNETRYDDILSIRSGRSNRSRASTATVGSKYKTGG---KGIHRNLDSAASVASTLG 107 A E R +I RSG + RS AST + + TGG +G L++ A G Sbjct: 97 AEERRGGAASREIAMRRSGVAARSAASTHSTPWRRTTGGRWARGGGGRLEAGGGAAEEAG 156 Query: 106 GDYR 95 G R Sbjct: 157 GGER 160 >07_03_1734 + 29120474-29120705,29120839-29120949,29121854-29121966, 29122119-29124128 Length = 821 Score = 26.6 bits (56), Expect = 5.6 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 Query: 105 PPSVDATDAAESKFLCIPFPPVLYLE 182 PPS+ + DAA +K+ IP P +L E Sbjct: 221 PPSLSSPDAANNKYSEIPNPLILMNE 246 >06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960, 2428105-2428671,2428822-2428935,2431308-2432246 Length = 624 Score = 26.6 bits (56), Expect = 5.6 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = -1 Query: 345 PSGEVDSDTDDTGNETQGGKPSKLLK 268 P G + DDT T+ PSK+LK Sbjct: 215 PEGSFEDARDDTAETTEQWPPSKMLK 240 >04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 Length = 676 Score = 26.2 bits (55), Expect = 7.4 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = -3 Query: 274 SEARNETRYDDILSIRSG-RSNRSRASTATVGSKYKTGGKGIHRNLDSAAS 125 S+ R R DD R G S+ SR+ + S + G+G+HR AA+ Sbjct: 145 SDMRCPRRGDDSSMERGGGSSSSSRSLSREPSSAVQERGRGLHRGASPAAA 195 >01_03_0137 - 12904727-12904981,12907192-12907605 Length = 222 Score = 26.2 bits (55), Expect = 7.4 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -1 Query: 336 EVDSDTDDTGNETQGGKPSK 277 E D D DD G++ G+PSK Sbjct: 202 EDDDDDDDDGDDDDDGRPSK 221 >04_04_1250 + 32077590-32078000,32078132-32078308,32078437-32078561, 32078629-32078761,32078866-32079015,32079105-32079158, 32079437-32079532,32080021-32080095,32080723-32080824, 32080903-32081589,32081686-32081817,32081916-32082023, 32082170-32082319 Length = 799 Score = 25.8 bits (54), Expect = 9.8 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = -3 Query: 280 EASEARNETRYDDILSIRSGRSNRSRASTATVGSKYKTGG 161 EA R T+ + + +++GR +R + T + KTGG Sbjct: 714 EAHIKRKLTKEERLEMVKAGREDRGKYQARTAVKQKKTGG 753 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,194,220 Number of Sequences: 37544 Number of extensions: 112850 Number of successful extensions: 403 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 398 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 402 length of database: 14,793,348 effective HSP length: 73 effective length of database: 12,052,636 effective search space used: 530315984 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -