Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0909
         (354 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)                 28   1.9  

>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 262 NETRYDDILSIRSGRSNRSRASTATVGSK 176
           N  R  + L+ R+  S RSR+ST T GS+
Sbjct: 686 NALRMAETLNARTAESARSRSSTGTTGSR 714


>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
          Length = 1463

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 98  QTEESQGR-YQEEGQARSLLPTYPCPGQI 15
           Q E   G+ YQE G  R LLPT   PGQ+
Sbjct: 330 QPEGVPGKLYQEGGMGRGLLPTPGVPGQM 358


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,949,948
Number of Sequences: 59808
Number of extensions: 118563
Number of successful extensions: 395
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)