Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0909
         (354 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81122-6|CAB03358.1|  663|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical ...    29   1.2  
U61952-4|AAK84529.1|  267|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AL132948-30|CAB61063.1|  365|Caenorhabditis elegans Hypothetical...    27   5.0  
Z68335-5|CAL63990.1|  202|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z68333-5|CAA92724.2|  202|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>Z81122-6|CAB03358.1|  663|Caenorhabditis elegans Hypothetical
           protein T13F2.7 protein.
          Length = 663

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 342 SGEVDSDTDDTGNETQGGK 286
           +G+VD D+DD GN T GG+
Sbjct: 404 TGDVDMDSDDDGNVTIGGE 422


>AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical
            protein Y46E12BL.2 protein.
          Length = 1334

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 262  NETRYDDILSIRSGRSNRSRASTATVGSKYKTGGKGIHRNLDSAASVASTLG 107
            N    D+ILS      +   A T    +    GGKGI+R+    + V S++G
Sbjct: 1227 NSDSEDEILSDDDDDDDEKDAKTFVSRAAPSYGGKGIYRDTSGKSQVGSSVG 1278


>U61952-4|AAK84529.1|  267|Caenorhabditis elegans Hypothetical
           protein F42A9.7 protein.
          Length = 267

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 235 SIRSGRSNRSRASTATVGSKYKTGGKGIHRN 143
           S +SGRS++S  ST T GSK     +    N
Sbjct: 66  SSKSGRSSKSSNSTKTTGSKSSKSSRSQRSN 96


>AL132948-30|CAB61063.1|  365|Caenorhabditis elegans Hypothetical
           protein Y39B6A.39 protein.
          Length = 365

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 102 SPPSVDATDAAESKFLCIPFPPVLYLEPTVAVE 200
           +PP++     A  KF C PFPP L   P+   +
Sbjct: 156 TPPAIQQHCQAIKKF-CTPFPPELLSNPSATCQ 187


>Z68335-5|CAL63990.1|  202|Caenorhabditis elegans Hypothetical
           protein C05C12.6 protein.
          Length = 202

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 114 VDATDAAESKFLCIPFPPVLYLEP 185
           +DATD  +S+  C P PP    EP
Sbjct: 174 LDATDFDDSRSRCTPDPPYQQREP 197


>Z68333-5|CAA92724.2|  202|Caenorhabditis elegans Hypothetical
           protein C05C12.6 protein.
          Length = 202

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 114 VDATDAAESKFLCIPFPPVLYLEP 185
           +DATD  +S+  C P PP    EP
Sbjct: 174 LDATDFDDSRSRCTPDPPYQQREP 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,805,254
Number of Sequences: 27780
Number of extensions: 88574
Number of successful extensions: 279
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)