BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0909 (354 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81122-6|CAB03358.1| 663|Caenorhabditis elegans Hypothetical pr... 29 1.2 AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical ... 29 1.2 U61952-4|AAK84529.1| 267|Caenorhabditis elegans Hypothetical pr... 27 5.0 AL132948-30|CAB61063.1| 365|Caenorhabditis elegans Hypothetical... 27 5.0 Z68335-5|CAL63990.1| 202|Caenorhabditis elegans Hypothetical pr... 26 8.7 Z68333-5|CAA92724.2| 202|Caenorhabditis elegans Hypothetical pr... 26 8.7 >Z81122-6|CAB03358.1| 663|Caenorhabditis elegans Hypothetical protein T13F2.7 protein. Length = 663 Score = 28.7 bits (61), Expect = 1.2 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = -1 Query: 342 SGEVDSDTDDTGNETQGGK 286 +G+VD D+DD GN T GG+ Sbjct: 404 TGDVDMDSDDDGNVTIGGE 422 >AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical protein Y46E12BL.2 protein. Length = 1334 Score = 28.7 bits (61), Expect = 1.2 Identities = 16/52 (30%), Positives = 24/52 (46%) Frame = -3 Query: 262 NETRYDDILSIRSGRSNRSRASTATVGSKYKTGGKGIHRNLDSAASVASTLG 107 N D+ILS + A T + GGKGI+R+ + V S++G Sbjct: 1227 NSDSEDEILSDDDDDDDEKDAKTFVSRAAPSYGGKGIYRDTSGKSQVGSSVG 1278 >U61952-4|AAK84529.1| 267|Caenorhabditis elegans Hypothetical protein F42A9.7 protein. Length = 267 Score = 26.6 bits (56), Expect = 5.0 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -3 Query: 235 SIRSGRSNRSRASTATVGSKYKTGGKGIHRN 143 S +SGRS++S ST T GSK + N Sbjct: 66 SSKSGRSSKSSNSTKTTGSKSSKSSRSQRSN 96 >AL132948-30|CAB61063.1| 365|Caenorhabditis elegans Hypothetical protein Y39B6A.39 protein. Length = 365 Score = 26.6 bits (56), Expect = 5.0 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +3 Query: 102 SPPSVDATDAAESKFLCIPFPPVLYLEPTVAVE 200 +PP++ A KF C PFPP L P+ + Sbjct: 156 TPPAIQQHCQAIKKF-CTPFPPELLSNPSATCQ 187 >Z68335-5|CAL63990.1| 202|Caenorhabditis elegans Hypothetical protein C05C12.6 protein. Length = 202 Score = 25.8 bits (54), Expect = 8.7 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +3 Query: 114 VDATDAAESKFLCIPFPPVLYLEP 185 +DATD +S+ C P PP EP Sbjct: 174 LDATDFDDSRSRCTPDPPYQQREP 197 >Z68333-5|CAA92724.2| 202|Caenorhabditis elegans Hypothetical protein C05C12.6 protein. Length = 202 Score = 25.8 bits (54), Expect = 8.7 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +3 Query: 114 VDATDAAESKFLCIPFPPVLYLEP 185 +DATD +S+ C P PP EP Sbjct: 174 LDATDFDDSRSRCTPDPPYQQREP 197 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,805,254 Number of Sequences: 27780 Number of extensions: 88574 Number of successful extensions: 279 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 260 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 279 length of database: 12,740,198 effective HSP length: 73 effective length of database: 10,712,258 effective search space used: 471339352 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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