Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0909
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.4  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   2.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   4.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   5.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   7.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   7.5  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    20   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.9  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    20   9.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   9.9  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 339 GEVDSDTDDTGNE 301
           GEVD D DD G++
Sbjct: 387 GEVDEDDDDDGDD 399


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 14/54 (25%), Positives = 19/54 (35%)
 Frame = -3

Query: 259 ETRYDDILSIRSGRSNRSRASTATVGSKYKTGGKGIHRNLDSAASVASTLGGDY 98
           E R  D   + SG  +  RA     G + K    GI+ +  S         G Y
Sbjct: 236 EKRSTDFQDVESGSESFKRARMGFHGMRGKRDAAGIYGSNSSTVGTIFGYQGTY 289


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 332 LIRTPMTQATKPKAASLRSF*SPERN 255
           L + P+TQ+ K  A +L +   P RN
Sbjct: 331 LKKEPITQSNKRTAGNLATREHPSRN 356


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 211 RSRASTATVGSKYKTGG 161
           RSR  TATV   + +GG
Sbjct: 250 RSRMLTATVNRNHLSGG 266


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 37  VGSKDRACPSS*YRPWLSS 93
           VGS+D   P   Y  W SS
Sbjct: 798 VGSEDSVIPRILYLTWYSS 816


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 303 RCLCHRCPNQLRR 341
           R LC  CP ++RR
Sbjct: 403 RILCACCPGRVRR 415


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 342 SGEVDSDTDDTGNETQGGKPSKLLK 268
           S +V S  +D+GN     KPS++++
Sbjct: 358 SAKVRSMFNDSGNPILKAKPSEVVQ 382


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = +3

Query: 288 CRLGFRCLCHRC 323
           C  G +C C++C
Sbjct: 79  CAEGMQCSCNKC 90


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 120 ATDAAESKFLCIPFPPVLYLEPT 188
           A  A+ S  L +  PP   LEPT
Sbjct: 664 AGTASHSTTLTVNVPPRWILEPT 686


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 303 RCLCHRCPNQLRR 341
           +C C R  N LRR
Sbjct: 79  KCFCKRRTNTLRR 91


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 303 RCLCHRCPNQLRR 341
           +C C R  N LRR
Sbjct: 527 KCFCKRRTNTLRR 539


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,094
Number of Sequences: 438
Number of extensions: 1082
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)