Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0909
         (354 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25580.1 68417.m03686 stress-responsive protein-related conta...    27   3.6  
At3g05800.1 68416.m00651 expressed protein                             27   3.6  
At3g21190.1 68416.m02678 expressed protein contains Pfam PF03138...    27   4.7  
At1g14420.1 68414.m01710 pectate lyase family protein similar to...    26   6.3  
At5g28760.1 68418.m03532 hypothetical protein contains Pfam prof...    26   8.3  

>At4g25580.1 68417.m03686 stress-responsive protein-related contains
           weak similarity to Low-temperature-induced 65 kDa
           protein (Desiccation-responsive protein 29B)
           (Swiss-Prot:Q04980) [Arabidopsis thaliana]
          Length = 626

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 262 NETRYDDILSIRSGR-SNRSRASTATVGSKYKTGGKGIHRNLDSAASVASTLGG 104
           N++ Y D +S+ +   ++++ A+   V SK    G+G H N    A   S+ GG
Sbjct: 382 NQSSYTDKISLATSVVADKAVAAKNAVASKLGYSGEGGHENRVEGAENPSSAGG 435


>At3g05800.1 68416.m00651 expressed protein
          Length = 211

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -3

Query: 277 ASEARNETRYDD-ILSIRSGRSNRSRAST----ATVGSKYKTGGKGIHRNLDSAASVAST 113
           A+ AR  TR+   IL  R G S R R +T    A   +   +GG G  R L +  +    
Sbjct: 98  ATTARGATRWSRAILVSRFGTSLRRRRNTKPASALAAAIRGSGGSGRRRKLSAVGNRVRV 157

Query: 112 LGG 104
           LGG
Sbjct: 158 LGG 160


>At3g21190.1 68416.m02678 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 422

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 200 LHRHRRLQVQDRGEGDTQEFRFCG-VCSVYAGR*LQTEESQGRYQEEGQARSLLPTYP 30
           LHR     +Q++ +GD Q+  F G   SV  G     E S+G + E+     L P +P
Sbjct: 25  LHRDYFDSLQEKAQGDAQDIEFEGSKVSVKDGLVGTVEGSKGLWMEDN--TDLTPCWP 80


>At1g14420.1 68414.m01710 pectate lyase family protein similar to
           pectate lyase P59 SP:P15722 from [Lycopersicon
           esculentum]
          Length = 459

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -3

Query: 286 AFEASEARNETRYDDILSIRSGR 218
           A +ASE+RN+TR  ++  +RSGR
Sbjct: 71  AVDASESRNDTR-RELTQVRSGR 92


>At5g28760.1 68418.m03532 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 520

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 261 FRASEASKACRLGFRCLCHRCPNQLRRW 344
           F  SE  K C++G RC+ H     L  +
Sbjct: 64  FGPSEYQKMCKVGTRCIVHHTVKYLEEF 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,574,719
Number of Sequences: 28952
Number of extensions: 85343
Number of successful extensions: 274
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)