BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0909 (354 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g25580.1 68417.m03686 stress-responsive protein-related conta... 27 3.6 At3g05800.1 68416.m00651 expressed protein 27 3.6 At3g21190.1 68416.m02678 expressed protein contains Pfam PF03138... 27 4.7 At1g14420.1 68414.m01710 pectate lyase family protein similar to... 26 6.3 At5g28760.1 68418.m03532 hypothetical protein contains Pfam prof... 26 8.3 >At4g25580.1 68417.m03686 stress-responsive protein-related contains weak similarity to Low-temperature-induced 65 kDa protein (Desiccation-responsive protein 29B) (Swiss-Prot:Q04980) [Arabidopsis thaliana] Length = 626 Score = 27.1 bits (57), Expect = 3.6 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = -3 Query: 262 NETRYDDILSIRSGR-SNRSRASTATVGSKYKTGGKGIHRNLDSAASVASTLGG 104 N++ Y D +S+ + ++++ A+ V SK G+G H N A S+ GG Sbjct: 382 NQSSYTDKISLATSVVADKAVAAKNAVASKLGYSGEGGHENRVEGAENPSSAGG 435 >At3g05800.1 68416.m00651 expressed protein Length = 211 Score = 27.1 bits (57), Expect = 3.6 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Frame = -3 Query: 277 ASEARNETRYDD-ILSIRSGRSNRSRAST----ATVGSKYKTGGKGIHRNLDSAASVAST 113 A+ AR TR+ IL R G S R R +T A + +GG G R L + + Sbjct: 98 ATTARGATRWSRAILVSRFGTSLRRRRNTKPASALAAAIRGSGGSGRRRKLSAVGNRVRV 157 Query: 112 LGG 104 LGG Sbjct: 158 LGG 160 >At3g21190.1 68416.m02678 expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; Length = 422 Score = 26.6 bits (56), Expect = 4.7 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = -2 Query: 200 LHRHRRLQVQDRGEGDTQEFRFCG-VCSVYAGR*LQTEESQGRYQEEGQARSLLPTYP 30 LHR +Q++ +GD Q+ F G SV G E S+G + E+ L P +P Sbjct: 25 LHRDYFDSLQEKAQGDAQDIEFEGSKVSVKDGLVGTVEGSKGLWMEDN--TDLTPCWP 80 >At1g14420.1 68414.m01710 pectate lyase family protein similar to pectate lyase P59 SP:P15722 from [Lycopersicon esculentum] Length = 459 Score = 26.2 bits (55), Expect = 6.3 Identities = 12/23 (52%), Positives = 18/23 (78%) Frame = -3 Query: 286 AFEASEARNETRYDDILSIRSGR 218 A +ASE+RN+TR ++ +RSGR Sbjct: 71 AVDASESRNDTR-RELTQVRSGR 92 >At5g28760.1 68418.m03532 hypothetical protein contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287 Length = 520 Score = 25.8 bits (54), Expect = 8.3 Identities = 10/28 (35%), Positives = 14/28 (50%) Frame = +3 Query: 261 FRASEASKACRLGFRCLCHRCPNQLRRW 344 F SE K C++G RC+ H L + Sbjct: 64 FGPSEYQKMCKVGTRCIVHHTVKYLEEF 91 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,574,719 Number of Sequences: 28952 Number of extensions: 85343 Number of successful extensions: 274 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 272 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 274 length of database: 12,070,560 effective HSP length: 72 effective length of database: 9,986,016 effective search space used: 449370720 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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