Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0907
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.7  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   7.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 341  LRVAPEEHPVLLTEAPLNPKANREKMTHI 427
            LR+ P  H V+ T   +NP  + EK+ HI
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL-HI 1488


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 377 TEAPLNPKANREKMTHIMFETFNTPAMYVAIQAVLS--LYAVPVVPRYRAGLPRRCLPHR 550
           T A +    NRE +T +   +   PA++    + +   +YA+   PRYR  L +RC    
Sbjct: 300 TVALIGVYGNRELLTPV---STMLPAVFAKTVSCIDPWIYAINH-PRYRQELQKRCKWMG 355

Query: 551 AHLP 562
            H P
Sbjct: 356 IHEP 359


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 377 TEAPLNPKANREKMTHIMFETFNTPAMYVAIQAVLS--LYAVPVVPRYRAGLPRRCLPHR 550
           T A +    NRE +T +   +   PA++    + +   +YA+   PRYR  L +RC    
Sbjct: 300 TVALIGVYGNRELLTPV---STMLPAVFAKTVSCIDPWIYAINH-PRYRQELQKRCKWMG 355

Query: 551 AHLP 562
            H P
Sbjct: 356 IHEP 359


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 388 PQPQGQQREDDPYHV 432
           P+PQ + +   PYHV
Sbjct: 251 PKPQTKTKPTSPYHV 265


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 105 GMCKAGFAGD 134
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,567
Number of Sequences: 438
Number of extensions: 4769
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)