Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0906
         (348 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    23   0.68 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   1.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    20   8.3  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 23.4 bits (48), Expect = 0.68
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 85  HVLLFNLVNKVIGNY 129
           HV  F L NK++G Y
Sbjct: 119 HVFFFTLFNKLLGQY 133


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 97  FNLVNKVIGNYYKNRIR-LIFGIKFDESQ 180
           F L+N ++   YKN+ R LI   K  E Q
Sbjct: 483 FALINSILRKLYKNKYRKLIVDGKKSEEQ 511


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 91  LLFNLVNKVIGNYYK 135
           LL N+V  +I  YYK
Sbjct: 122 LLDNIVKPIIAFYYK 136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,843
Number of Sequences: 336
Number of extensions: 1095
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6876025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)