Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0906
         (348 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77133-2|CAB00864.2|  664|Caenorhabditis elegans Hypothetical pr...    29   0.91 
Z82282-3|CAB05275.1|  638|Caenorhabditis elegans Hypothetical pr...    27   3.7  

>Z77133-2|CAB00864.2|  664|Caenorhabditis elegans Hypothetical
           protein K03A11.4 protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +1

Query: 55  RNTSYYA*LEHVLLFNLVNKVIGNYYKNRIRLIFGIKFDESQREFGRRPVIPPTRNRRRF 234
           R  SY+      ++F  VNKV  N   N I + FG   ++  +      VIPP    + F
Sbjct: 220 RTLSYFTNHMDGVIFPYVNKVGENSRPNGIPIWFGKSLEKIDKTLLDEKVIPPDWPHKYF 279

Query: 235 LRL--QSSFVVIRAVRGHGYRT 294
            +    +   +      +GYRT
Sbjct: 280 CKTYKDNETSLFSEFHDYGYRT 301


>Z82282-3|CAB05275.1|  638|Caenorhabditis elegans Hypothetical
           protein T07G12.3 protein.
          Length = 638

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = +1

Query: 64  SYYA*LEHVLLFNLVNKVIGNYYKNRIRLIFGIKFDESQREFGRRPVIPPTRNRRRFLRL 243
           SY+     ++ F  VNKV  N   N + L FG   +  +R  G    +    N+     L
Sbjct: 200 SYFKNEFQMIEFPFVNKVGENSRPNGLPLWFGKSIEGGRRVTGDDVEVDWDWNQYCETYL 259

Query: 244 QSSFVVIRAVRGHGYRT 294
            +S  + +  + HGY T
Sbjct: 260 DNSSHIFKDFKDHGYAT 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,690,819
Number of Sequences: 27780
Number of extensions: 102579
Number of successful extensions: 161
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)