Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0906
         (348 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28270.1 68418.m03430 hypothetical protein similar to At2g121...    31   0.16 
At5g28480.1 68418.m03462 hypothetical protein                          27   4.5  
At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein ...    27   4.5  
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P...    27   4.5  
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to...    27   4.5  
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)...    26   6.0  
At2g46495.1 68415.m05788 zinc finger (C3HC4-type RING finger) fa...    26   7.9  

>At5g28270.1 68418.m03430 hypothetical protein similar to At2g12100,
           At2g05450, At1g45090, At2g16180, At2g06750
          Length = 574

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 338 PHNTVFKLPKSSLFYVLYPWPRTALITTNDDCS 240
           P+    +L K+  F+  YPW RT+ + T D C+
Sbjct: 217 PNEMTVELTKNLNFFCKYPWRRTSFLLTLDRCT 249


>At5g28480.1 68418.m03462 hypothetical protein
          Length = 1230

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 338 PHNTVFKLPKSSLFYVLYPWPRTALITT 255
           P+    +L K+  F+  YPW RT+ + T
Sbjct: 217 PNEMTVELTKNLDFFCKYPWGRTSFLLT 244


>At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 304

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 318 VTKKLVILRSIPVAAHGSD 262
           V+  LVI +S P+ AHGSD
Sbjct: 221 VSMNLVIHQSFPITAHGSD 239


>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At5g28270, At2g05450,
           At1g45090, At2g16180, At2g06750
          Length = 1224

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 338 PHNTVFKLPKSSLFYVLYPWPRTALITT 255
           P+    +L K+  F+  YPW RT+ + T
Sbjct: 226 PNEMTVELTKNLDFFCKYPWGRTSFLLT 253


>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
           At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
           contains Pfam profile PF02902: Ulp1 protease family,
           C-terminal catalytic domain
          Length = 1210

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 338 PHNTVFKLPKSSLFYVLYPWPRTALITT 255
           P+    +L K+  F+  YPW RT+ + T
Sbjct: 217 PNEMTVELTKNLDFFCKYPWGRTSFLLT 244


>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
           similar to RNA helicase GI:3776015 from [Arabidopsis
           thaliana]; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00270: DEAD/DEAH box
           helicase; matches EST OAO811-2
          Length = 581

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 31  LNCFHPKR-RNTSYYA*LEHVLLFNLVNKVIGNYYKNRIRLIFGIKFDESQ 180
           LN   PKR R   +   +++V+       + G++    IRLI  ++FDE Q
Sbjct: 221 LNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINMLRFDEKQ 271


>At2g46495.1 68415.m05788 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 878

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 344 TTPHNTVFKLPKSSLFYVLYPWPRTALITTND 249
           T  +NTV +LP S  F+V Y   R   I  ND
Sbjct: 360 TNLNNTVLQLPMSGTFFVQYIDYRKQQIYIND 391


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,096,724
Number of Sequences: 28952
Number of extensions: 90642
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)