Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0905
         (616 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   2.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   2.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   2.0  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   2.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.6  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    22   4.7  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    22   4.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   8.2  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +1

Query: 499 PSTEYNYSVADGHSGDNKSQQEVRDGDVSEGFHN 600
           PS EYN +      GD      ++   +  G+HN
Sbjct: 33  PSEEYNQNSYIPPGGDFFGNHHIQQQQLQYGYHN 66


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +1

Query: 499 PSTEYNYSVADGHSGDNKSQQEVRDGDVSEGFHN 600
           PS EYN +      GD      ++   +  G+HN
Sbjct: 33  PSEEYNQNSYIPPGGDFFGNHHIQQQQLQYGYHN 66


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +1

Query: 499 PSTEYNYSVADGHSGDNKSQQEVRDGDVSEGFHN 600
           PS EYN +      GD      ++   +  G+HN
Sbjct: 33  PSEEYNQNSYIPPGGDFFGNHHIQQQQLQYGYHN 66


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +1

Query: 499 PSTEYNYSVADGHSGDNKSQQEVRDGDVSEGFHN 600
           PS EYN +      GD      ++   +  G+HN
Sbjct: 33  PSEEYNQNSYIPPGGDFFGNHHIQQQQLQYGYHN 66


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 171 LPRGPCSVPGRPSCLPRGPCSV 236
           L    C VPG  +   R PCS+
Sbjct: 190 LTNAVCFVPGVVAMFSRKPCSI 211


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 171 LPRGPCSVPGRPSCLPRGPCSV 236
           L    C VPG  +   R PCS+
Sbjct: 190 LTNAVCFVPGVVAMFSRKPCSI 211


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +3

Query: 210 CLPRGPCSVPGRPSCYHTSPLRYSSAESVSSQNIVRH 320
           C P G       P   HT   + S  +   S+ I+RH
Sbjct: 56  CTPDGAELKRHLPDALHTECSKCSETQKNGSKKIMRH 92


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 494 LPQVPSTTTQ*LMVTPAITSPNKK 565
           LP   STTT+  + T   T P+ K
Sbjct: 161 LPPTTSTTTRTTLTTKFTTKPSTK 184


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 600 VMKPFTYITVAYFLLGL 550
           ++ P T  +V YF++GL
Sbjct: 503 IIIPVTLTSVCYFMIGL 519


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,380
Number of Sequences: 336
Number of extensions: 1780
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)