Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0905
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.8  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   3.8  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 252  CYHTSPLRYSSAESVSSQNIVRHDQPQTIQY 344
            CY +S L  S+A+  S  N++  +QP+  QY
Sbjct: 3728 CYLSSLLETSNAKISSRPNVLMPNQPEVKQY 3758


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = +3

Query: 189 SVPGRPSCLPRGPCSVPGRPSCYHTSPLRYSSAESVSSQNIVRH 320
           SVP   S +   P   P  PS   T P  YS+  SVSSQ  + H
Sbjct: 282 SVPSALSSISSTPFMKPSIPSTIPTIPSAYSA--SVSSQPPLTH 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,387
Number of Sequences: 5004
Number of extensions: 27906
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)