Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0905
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 33 0.14
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 31 0.96
03_02_0198 + 6344952-6347483 31 0.96
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 29 2.2
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 29 2.9
06_03_1282 - 28946363-28946533,28947234-28947272,28947399-289475... 29 3.9
02_05_1033 + 33642479-33642688,33643089-33643343,33643479-336436... 28 5.1
02_04_0413 + 22681957-22682035,22682253-22682788 28 5.1
01_05_0214 - 19362812-19363477 28 5.1
08_02_1436 + 27083698-27084111,27084333-27084416,27084502-270845... 28 6.8
07_03_0311 + 16597023-16597220,16598100-16598222,16598410-165984... 28 6.8
04_03_0799 - 19805190-19805749,19806316-19806403 28 6.8
01_05_0624 + 23772613-23774671,23774737-23775596 28 6.8
04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966 27 8.9
03_05_1002 - 29594462-29594581,29594686-29594781,29594857-295949... 27 8.9
03_05_0402 - 23851755-23851802,23852012-23852022,23853055-23853427 27 8.9
03_02_0213 + 6480521-6480644,6482347-6482499,6482582-6482980,648... 27 8.9
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/48 (41%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Frame = +3
Query: 135 PRCQARCCYPCSLP------RGPCSVPGRPSC-LP-RGPCSVPGRPSC 254
P C C PCS P RG C P P C LP PC +P P C
Sbjct: 107 PGCPCSCSTPCSFPPIGCHDRGICPPPCPPPCPLPCPPPCPLPCPPPC 154
Score = 31.1 bits (67), Expect = 0.73
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 141 CQARCCYPCSLP-RGPCSVPGRPSCLPRG 224
C C PC LP PC +P P C PRG
Sbjct: 130 CPPPCPPPCPLPCPPPCPLPCPPPCPPRG 158
>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
Length = 213
Score = 30.7 bits (66), Expect = 0.96
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +3
Query: 108 HCAP*PASAPRCQARC-CYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSC 254
HC P P P C C C G C+ P P C G CS+ +C
Sbjct: 120 HCCPEPPPPPPKPKPCECTYCGGHGGGCNKPAVPPC--AGGCSISDGGAC 167
>03_02_0198 + 6344952-6347483
Length = 843
Score = 30.7 bits (66), Expect = 0.96
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +3
Query: 165 CSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYSSAESVSSQN 308
CSLP C V G SC P G CS P C + S+E +N
Sbjct: 296 CSLPHDACDVYG--SCGPFGVCSNATNPECRCPAGFEPRSSEEWRLEN 341
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 189 SVPGRPSCLPRGPCSVPGRPSCYHTSPLRYSSAESVSSQ 305
SVPG+PS + P S+ GRP SP +S + Q
Sbjct: 352 SVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQ 390
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +3
Query: 174 PRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYSSAESVS 299
P P P PS P P PG P+ TSP ++ S S
Sbjct: 1566 PTSPSYSPASPSYSPTSPSYTPGSPTYSPTSPSYSPTSPSYS 1607
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +3
Query: 162 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYSSAESVS 299
P P P PG P+ P P P PS TSP ++ S S
Sbjct: 1576 PSYSPTSPSYTPGSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1621
>06_03_1282 -
28946363-28946533,28947234-28947272,28947399-28947566,
28947605-28947697,28948135-28948215,28948409-28948499,
28948657-28948728,28948803-28948903,28949283-28949381,
28949631-28949954
Length = 412
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 13 IVVLCALV-AVSKAGLLAAPVHYSPAEAVSSQSIVRHDQPQ 132
IV+L A V AV L P HY+P VSS S P+
Sbjct: 15 IVILIAFVCAVGIGAYLYTPQHYTPCYLVSSNSCSSRPPPE 55
>02_05_1033 +
33642479-33642688,33643089-33643343,33643479-33643603,
33643827-33643908,33644008-33644076,33644102-33644341,
33644431-33644496,33645087-33645155,33645229-33645366,
33645681-33645754,33646146-33646255,33646428-33646525,
33646595-33646633,33646771-33646890,33646984-33647109,
33647321-33647382,33647467-33647518,33648182-33648436
Length = 729
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 117 P*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPL 272
P P ++P + Y + SV G P+ L PC VP CY+ P+
Sbjct: 679 PKPQTSPT--STLSYKLYVHTAEASVIGEPTSLLVSPCVVPPAGECYNRYPV 728
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = +3
Query: 111 CAP*PASA---PRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYH 260
C P P+ P C+ CC C G C P P C + C P P C H
Sbjct: 129 CPPSPSCENHHPPCKPGCCC-CGCSGGECPPPPSPPC--QHEC--PPTPPCEH 176
>01_05_0214 - 19362812-19363477
Length = 221
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +3
Query: 165 CSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYSSAESVSSQNI 311
C LP P P +PS P P P P+ TSPL A+ + I
Sbjct: 29 CPLPLSPPYSPAQPSPPPTSP---PASPTLLPTSPLSDDHADHTTDSLI 74
>08_02_1436 +
27083698-27084111,27084333-27084416,27084502-27084551,
27084676-27084724,27085471-27085545,27085724-27085837
Length = 261
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 192 VPGRPSCLPRGPCSVPGRPSCYHTSPLRY 278
+PG P P+G S PGRP +SP+ +
Sbjct: 221 IPG-PLAFPKGLTSAPGRPRVAPSSPVMF 248
>07_03_0311 +
16597023-16597220,16598100-16598222,16598410-16598448,
16599063-16599288,16599456-16599466
Length = 198
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 573 VAYFLLGLVIAGVTISY*VVVLGTWG 496
+ Y +L V A V +SY VV+ TWG
Sbjct: 19 LGYLMLAFVAAIVAVSYYAVVVYTWG 44
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/49 (28%), Positives = 18/49 (36%)
Frame = +3
Query: 108 HCAP*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSC 254
HC P P C + C G C+ P C G CS+ +C
Sbjct: 124 HCCPAPPKPKPKPCECTHHCGGHGGGCNKPAVSPC--GGGCSISDGGAC 170
>01_05_0624 + 23772613-23774671,23774737-23775596
Length = 972
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 120 MAHNALGRNGFSGRVVHGSSQKSSFRHRDQSTQYYD 13
+ H L R GF GRV H S+ + D +++ YD
Sbjct: 159 LTHLNLARMGFYGRVPHQLGNLSNLQFLDITSEIYD 194
>04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966
Length = 766
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 165 CSLPRGPCSVPGRPSCLPRG-PCSVP-GRP 248
C+ P+ PCSVPG LP G C P RP
Sbjct: 322 CADPKYPCSVPGTCHNLPGGFECLCPRSRP 351
>03_05_1002 -
29594462-29594581,29594686-29594781,29594857-29594916,
29595574-29595618,29595956-29596070,29596200-29596246,
29596529-29596822
Length = 258
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 168 SLPRGPCSVP--GRPSCLPRGPCSVPGRPSCYHTSPLRYSSAESVSSQNIVRHDQPQ 332
SLP S+P RP+ PR +PGR C+ + A + S V P+
Sbjct: 9 SLPVPRVSLPPSARPAAAPRHGLLIPGRRGCFRLRGSPAAPAAAASGSPSVPSSSPE 65
>03_05_0402 - 23851755-23851802,23852012-23852022,23853055-23853427
Length = 143
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/65 (32%), Positives = 22/65 (33%)
Frame = +3
Query: 102 PKHCAP*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYS 281
P C P AP C Y C P + P P G VP PS T S
Sbjct: 22 PSRCRTLPQPAPTSHEVCPYRCQSPSAANHIRIPPQHAPAGAEVVP--PSAGATPGTSPS 79
Query: 282 SAESV 296
AE V
Sbjct: 80 EAEVV 84
>03_02_0213 +
6480521-6480644,6482347-6482499,6482582-6482980,
6483158-6483234,6483990-6485312
Length = 691
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 484 RRLPTPS-TEYNYSVADGHSGDNKSQQEVRDGDVSEG 591
R PT + EY S DG G KSQ++ RD D +G
Sbjct: 153 RTRPTNNDNEYASSANDGAEGSWKSQKKKRDKDDDDG 189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,085,380
Number of Sequences: 37544
Number of extensions: 220158
Number of successful extensions: 753
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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