Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0905
(616 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2) 39 0.003
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09) 31 0.74
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 31 0.74
SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053) 29 3.0
SB_3877| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_48810| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0) 28 5.2
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17) 28 6.9
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11) 28 6.9
SB_687| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09) 27 9.1
SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0) 27 9.1
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094) 27 9.1
>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
Length = 939
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 123 PASAPRCQARCC-YPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYSSAESV 296
PA AP A+ YP +P P VPG P+ P P VPG P+ P + + SV
Sbjct: 869 PAQAPGYPAQAPGYPAQVPGYPAQVPGYPAQAPGCPAQVPGYPAQVPGYPAQVPAGSSV 927
Score = 34.3 bits (75), Expect = 0.080
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +3
Query: 99 FPKHCAP*PASAPRCQARCC-YPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSC-YHTSPL 272
+P PA P A+ YP P P VPG P+ +P P VP S Y +SP
Sbjct: 875 YPAQAPGYPAQVPGYPAQVPGYPAQAPGCPAQVPGYPAQVPGYPAQVPAGSSVQYVSSPQ 934
Query: 273 RY 278
++
Sbjct: 935 QF 936
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 174 PRGPCSVPGRPSCLPRGPCSVPGRPS 251
P P PG P+ P P VPG P+
Sbjct: 866 PGNPAQAPGYPAQAPGYPAQVPGYPA 891
>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Frame = +3
Query: 135 PRCQAR--CCY---PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYS 281
PRC C Y PC PC RP C PC RP Y P RY+
Sbjct: 183 PRCYTLRPCRYMLRPCRYMLRPCRYMLRPCCYTLRPCRYMLRPCRYTLRPCRYT 236
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +3
Query: 162 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRY 278
PC PC RP C PC RP Y P RY
Sbjct: 169 PCRYTLRPCRYTLRPRCYTLRPCRYMLRPCRYMLRPCRY 207
Score = 31.5 bits (68), Expect = 0.56
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Frame = +3
Query: 153 CCY---PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYS 281
CCY PC PC RP PC RP Y P RY+
Sbjct: 212 CCYTLRPCRYMLRPCRYTLRPCRYTLRPCRYTLRPCRYTLRPCRYT 257
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 162 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYS 281
PC PC RP PC RP Y P RY+
Sbjct: 260 PCGYTLRPCGYTLRPHRYTLRPCRYTLRPCRYTLRPCRYT 299
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 162 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYS 281
PC PC RP PC RP Y P RY+
Sbjct: 246 PCRYTLRPCRYTLRPCGYTLRPCGYTLRPHRYTLRPCRYT 285
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 162 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYS 281
PC PC RP PC RP Y P RY+
Sbjct: 281 PCRYTLRPCRYTLRPCRYTLRPCRYTLRPRRYTLRPCRYT 320
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +3
Query: 162 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYS 281
PC PC RP C PC R Y P Y+
Sbjct: 386 PCRYTLSPCRYTLRPRCCTLRPCRYTLRTCRYALRPRHYT 425
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 162 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYS 281
PC PC RP PC RP Y P RY+
Sbjct: 211 PCCYTLRPCRYMLRPCRYTLRPCRYTLRPCRYTLRPCRYT 250
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 162 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYS 281
PC PC RP PC RP Y P RY+
Sbjct: 239 PCRYTLRPCRYTLRPCRYTLRPCGYTLRPCGYTLRPHRYT 278
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 162 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYS 281
PC PC RP PC RP Y P RY+
Sbjct: 456 PCRYTLRPCRYMLRPCRYRLRPCGYTLRPCRYMLRPCRYT 495
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 31.1 bits (67), Expect = 0.74
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 102 PKHCAP*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHT 263
P+ C+ + C ++C C P G RG C PG+ SCYH+
Sbjct: 770 PRDCSNMNSDPNACNSKCVDGCFCPEGKIQ--------DRGKCVDPGQCSCYHS 815
>SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09)
Length = 133
Score = 31.1 bits (67), Expect = 0.74
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 102 PKHCAP*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHT 263
P+ C+ + C ++C C P G RG C PG+ SCYH+
Sbjct: 71 PRDCSNMNSDPNACNSKCVDGCFCPEGKIQ--------DRGKCVDPGQCSCYHS 116
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 31.1 bits (67), Expect = 0.74
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +3
Query: 123 PASAPRCQARCC--YPCSLPRGPCSVPGRPSCLPRG-PCSVPGRPS 251
P+ AP CC YP P P + P +P+ PR P + P P+
Sbjct: 507 PSCAPTYSPSCCGSYPAPQPPSPPAPPPKPAPPPRSPPAAAPCNPA 552
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 135 PRC-QARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYSSAESVSSQ 305
P C Q RCC ++P+GP P P + + P +P P +P+ A Q
Sbjct: 441 PICIQHRCCN-ANMPQGPPPPPPPPPQMYQQPLMMPQAPMMMPQAPMMMPQAPMTMQQ 497
>SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 162 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSP--LRYSSAESVSSQNIVRHDQPQT 335
P ++ PC+V P + PC+V P SP +++S S V+H P T
Sbjct: 103 PYTVQHSPCTVQHSPYTVQHSPCTVQHSPYTVQHSPYTVQHSPYAVQHSPYTVQH-SPYT 161
Query: 336 IQY 344
+Q+
Sbjct: 162 VQH 164
>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
Length = 1152
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 159 YPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTS 266
YP + PC +P SC P+ PCS PG Y TS
Sbjct: 736 YPPYTGQVPC-LPS--SCTPQNPCSPPGCTPQYSTS 768
>SB_3877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 159 YPCSLPRGPCSVPGRPSCLPRGPCSVP 239
+ C LP C +P CLP C +P
Sbjct: 27 HKCGLPYNECGLPYNKCCLPYTNCGLP 53
>SB_48810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/40 (47%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 54 TSGCSRALLSR*SRFFPK-HCAP*PASAPRCQARCCYPCS 170
TS SRA L F P HCA S PRC AR P S
Sbjct: 18 TSPLSRAALRAYKAFHPVLHCALYKCSTPRCIARYTSPPS 57
>SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 689
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +3
Query: 126 ASAPRCQARCCY--PCSLPRGPCSVPGRPSCLPRGPC 230
AS + A C Y PCS G CSV G +C PC
Sbjct: 2 ASCLQVTATCSYGNPCS-NGGSCSVDGSETCSNSNPC 37
>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
Length = 1440
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 156 CYPCSLPRGPCSVPGRPSCLPRGPCSVPG-RPSCYHT 263
C C++PR C++P LP C++P P C T
Sbjct: 846 CMMCAIPRVICAIPRVMYALPCVMCAIPRVIPPCAST 882
>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
Length = 1692
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +3
Query: 159 YPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSC---YHTSPLRYSSAES 293
YP + P ++PG S P ++PG PS Y T+ RY A +
Sbjct: 332 YPSANTGYPTAIPGYSSANTGYPTAIPGYPSANTGYPTATPRYPPAST 379
>SB_687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 579
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -1
Query: 97 KRLQRESSAR-EQPEVQLSTPR-PKHTVLRFWRT 2
KRL+ S AR EQP +STP+ KH V + +T
Sbjct: 203 KRLRTNSQARSEQPVTPISTPKSSKHVVSKVGQT 236
>SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)
Length = 666
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 135 PRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSP 269
P QAR Y L GP ++PG P +P+ + PG + SP
Sbjct: 339 PTPQARWIYQEELCTGPETIPG-PEMIPKSTPTDPGTRNDTEESP 382
>SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 1381
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 34 VAVSKAGLLAAPVHYSPAEAVSSQS 108
VAV K+ L +P PA AVSSQS
Sbjct: 1081 VAVDKSSWLGSPPFLLPARAVSSQS 1105
>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
Length = 1671
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 189 SVPGRPSCLPRGPCSVPGRPSCYHTSPLRYSSAESVSSQ 305
SVPG P+C+PRG R Y + + E V S+
Sbjct: 1389 SVPGTPACVPRGKSISKLRLFRYDAAERVFDEGEDVFSR 1427
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,609,435
Number of Sequences: 59808
Number of extensions: 239440
Number of successful extensions: 895
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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