Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0905
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31850.3 68414.m03915 dehydration-responsive protein, putativ...    29   3.2  
At1g31850.2 68414.m03914 dehydration-responsive protein, putativ...    29   3.2  
At1g31850.1 68414.m03913 dehydration-responsive protein, putativ...    29   3.2  
At2g43560.1 68415.m05412 immunophilin / FKBP-type peptidyl-proly...    27   7.5  
At1g62780.1 68414.m07086 expressed protein                             27   9.9  
At1g29080.1 68414.m03560 peptidase C1A papain family protein con...    27   9.9  

>At1g31850.3 68414.m03915 dehydration-responsive protein, putative
           strong similarity to early-responsive to dehydration
           stress ERD3 protein [Arabidopsis thaliana] GI:15320410;
           contains Pfam profile PF03141: Putative
           methyltransferase
          Length = 603

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +3

Query: 174 PRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYSSAESVSSQNIVRHD 323
           P  PC V   P     G  S+P  P   H +P R        S N ++HD
Sbjct: 383 PLRPCVVAPTPKVKKSGLGSIPKWPERLHVAPERIGDVHG-GSANSLKHD 431


>At1g31850.2 68414.m03914 dehydration-responsive protein, putative
           strong similarity to early-responsive to dehydration
           stress ERD3 protein [Arabidopsis thaliana] GI:15320410;
           contains Pfam profile PF03141: Putative
           methyltransferase
          Length = 603

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +3

Query: 174 PRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYSSAESVSSQNIVRHD 323
           P  PC V   P     G  S+P  P   H +P R        S N ++HD
Sbjct: 383 PLRPCVVAPTPKVKKSGLGSIPKWPERLHVAPERIGDVHG-GSANSLKHD 431


>At1g31850.1 68414.m03913 dehydration-responsive protein, putative
           strong similarity to early-responsive to dehydration
           stress ERD3 protein [Arabidopsis thaliana] GI:15320410;
           contains Pfam profile PF03141: Putative
           methyltransferase
          Length = 603

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +3

Query: 174 PRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYSSAESVSSQNIVRHD 323
           P  PC V   P     G  S+P  P   H +P R        S N ++HD
Sbjct: 383 PLRPCVVAPTPKVKKSGLGSIPKWPERLHVAPERIGDVHG-GSANSLKHD 431


>At2g43560.1 68415.m05412 immunophilin / FKBP-type peptidyl-prolyl
           cis-trans isomerase family protein identical to Probable
           FKBP-type peptidyl-prolyl cis-trans isomerase 2,
           chloroplast precursor (Ppiase) (Rotamase)
           (SP:O22870)[Arabidopsis thaliana]; contains Pfam
           PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type
          Length = 223

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 162 PCSLPRGPCSVPGRPSCLPRGP 227
           P + P+G  S PGRP   P  P
Sbjct: 184 PLAFPKGLVSAPGRPRVAPNSP 205


>At1g62780.1 68414.m07086 expressed protein
          Length = 237

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 121 HGAQCFGKKRLQRESSAREQPEVQLSTPRPKHTVLR 14
           H A+   K+RL+R+S ARE  + QL   + +   LR
Sbjct: 45  HIARLEFKRRLERDSEAREAFQKQLREEKERRQALR 80


>At1g29080.1 68414.m03560 peptidase C1A papain family protein
           contains similarity to cysteine protease SPCP1
           GI:13491750 from [Ipomoea batatas]; contains Pfam
           profile PF00112: Papain family cysteine protease
          Length = 346

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 159 YPCSLPRGPCSVPGRPSCLPRGPCSVP 239
           YP  +  GPC    RP+ L RG  +VP
Sbjct: 217 YPYQVKEGPCRSNARPAILIRGFENVP 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,123,913
Number of Sequences: 28952
Number of extensions: 159308
Number of successful extensions: 572
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)