Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0903
         (679 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    27   0.19 
AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical pro...    23   2.3  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   3.0  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -2

Query: 519 GLDREDVSHRTLCPLPLSACNTAV*LIPSEL 427
           GL+R DVSH  L  LPL++ + A     SEL
Sbjct: 344 GLERLDVSHNLLGKLPLTSLSLASAQTLSEL 374


>AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical
           protein protein.
          Length = 95

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 600 C*DIHLFFEVVGSVVGDDPSPREHSRAGLDREDVSHRT 487
           C + H+   V+G +    P P + S+  + R+ V  +T
Sbjct: 36  CDEKHVSPHVIGGITSGGPIPTKSSKYPIKRKRVRFQT 73


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 521 LGWTGKMCHI 492
           +GWTGK+C +
Sbjct: 127 VGWTGKVCDV 136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,024
Number of Sequences: 336
Number of extensions: 3357
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)