Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0903
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0520 - 18495118-18498237                                         29   2.6  
11_01_0419 + 3226224-3226756,3228010-3228169,3228256-3228435,322...    28   6.0  

>10_08_0520 - 18495118-18498237
          Length = 1039

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 468 SRAKGKGCDVTHLPGPAQLWNVLVGMDHRRPHSLRLQRTNE-CPNSVILFKSSTKSELY 641
           SR   KG +  H+P   +LW  +V + +     L L R  E CP  V L+ +  + E Y
Sbjct: 481 SRVLRKGLE--HIPDSVRLWKAVVELANEEDARLLLHRAVECCPLHVELWLALARLETY 537


>11_01_0419 +
           3226224-3226756,3228010-3228169,3228256-3228435,
           3228525-3228659,3229262-3229344,3229442-3229535,
           3229649-3229735
          Length = 423

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 492 DVTHLPGPAQLWNVLVGMDHRRPHSLRLQRTNECPNSVILFKSSTKS 632
           D    P P    +V +  DHRR    R+     CP+++ L   +TKS
Sbjct: 166 DAARAPPPGNSPHV-IAFDHRRSTLARIPHLGHCPSNLELNIDTTKS 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,662,266
Number of Sequences: 37544
Number of extensions: 302995
Number of successful extensions: 717
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)