Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0903
(679 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 32 0.37
SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1) 30 2.0
SB_28342| Best HMM Match : HAT (HMM E-Value=0.043) 30 2.0
SB_34471| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_29602| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 446 YTAVLHALKGKGQRVRCDTSSRSSPALECSRGDG--SSPTTLPTTSK 580
+TA+ A+ +G +V CD ++ SP +E S G G + P T+ TT +
Sbjct: 1010 FTALARAICFRGPQVNCDVTTSGSP-MEGSTGTGVQNKPETISTTDR 1055
>SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)
Length = 982
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 550 IADHTPYDFKEQMNVLTVSYSLNHQQNLNSISNHFPI 660
I H P + MN +T Y + + LN I++H+PI
Sbjct: 64 ITSHYPIPYMVIMNDITSHYLIPYMVILNDITSHYPI 100
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 550 IADHTPYDFKEQMNVLTVSYSLNHQQNLNSISNHFPI 660
I H P + MN +T Y + + +N I++H+PI
Sbjct: 94 ITSHYPIPYMVIMNDITSHYPIPYMVIMNDITSHYPI 130
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 550 IADHTPYDFKEQMNVLTVSYSLNHQQNLNSISNHFPI 660
I H P + MN +T Y + + +N I++H+PI
Sbjct: 109 ITSHYPIPYMVIMNDITSHYPIPYMVIMNDITSHYPI 145
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 550 IADHTPYDFKEQMNVLTVSYSLNHQQNLNSISNHFPI 660
I H P + MN +T Y + + +N I++H+PI
Sbjct: 124 ITSHYPIPYMVIMNDITSHYPIPYMVIMNDITSHYPI 160
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 550 IADHTPYDFKEQMNVLTVSYSLNHQQNLNSISNHFPI 660
I H P + MN +T Y + + +N I++H+PI
Sbjct: 139 ITSHYPIPYMVIMNDITSHYPIPYMVIMNDITSHYPI 175
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 550 IADHTPYDFKEQMNVLTVSYSLNHQQNLNSISNHFPI 660
I H P + MN +T Y + + +N I++H+PI
Sbjct: 154 ITSHYPIPYMVIMNDITSHYPIPYMVIINDITSHYPI 190
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 550 IADHTPYDFKEQMNVLTVSYSLNHQQNLNSISNHFPI 660
I H P + MN +T Y + + +N I++H+PI
Sbjct: 184 ITSHYPIPYMVIMNDITSHYPIPYMVIMNDITSHYPI 220
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 550 IADHTPYDFKEQMNVLTVSYSLNHQQNLNSISNHFPI 660
I H P + MN +T Y + + +N I++H+PI
Sbjct: 4 ITSHYPIPYMVIMNDITSHYPIPYTVIMNDITSHYPI 40
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 550 IADHTPYDFKEQMNVLTVSYSLNHQQNLNSISNHFPI 660
I H P + +N +T Y + + +N I++H+PI
Sbjct: 169 ITSHYPIPYMVIINDITSHYPIPYMVIMNDITSHYPI 205
>SB_28342| Best HMM Match : HAT (HMM E-Value=0.043)
Length = 758
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 501 HLPGPAQLWNVLVGMDHRRPHSLRLQRTNE-CPNSVILFKSSTKSELY 641
H+P ++W V ++ + L R E CP SV L+ + + E Y
Sbjct: 142 HIPNSVRIWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLETY 189
>SB_34471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 541 PTRTFQSWAGPGRCVTSHPLPFAL 470
P+ F W+G GRCVT L F L
Sbjct: 217 PSELFYIWSGKGRCVTRDMLYFCL 240
>SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1082
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 485 RVRCDTSSRSSPALECSRGDGSSPTTLPTTSKNK 586
+V+ +TS +SSP +E SRGD S + S K
Sbjct: 903 KVQVNTSGQSSPFVEASRGDQSQHNSSHGNSPGK 936
>SB_29602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 529 FQSWAGPGRCVTSHPLPFALECVQYCGIINS**TFNT--MLNYVRQ 398
FQ + PGRCV+S P GI+ TFNT ++NY +Q
Sbjct: 3 FQRESNPGRCVSSQVPPRKTNVALLKGIVMK-ITFNTIGIVNYPKQ 47
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,007,977
Number of Sequences: 59808
Number of extensions: 379274
Number of successful extensions: 1357
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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