Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0903
         (679 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001666-1|AAH01666.1|  941|Homo sapiens PRP6 pre-mRNA processin...    30   6.6  
AL356790-1|CAH71582.1|  941|Homo sapiens PRP6 pre-mRNA processin...    30   6.6  
AL355803-2|CAC16610.2|  941|Homo sapiens PRP6 pre-mRNA processin...    30   6.6  
AL118506-15|CAI21906.1|  941|Homo sapiens PRP6 pre-mRNA processi...    30   6.6  
AF221842-1|AAF66128.1|  941|Homo sapiens U5 snRNP-associated 102...    30   6.6  
AF026031-1|AAD01798.1|  941|Homo sapiens putative mitochondrial ...    30   6.6  
AB019219-1|BAA37140.1|  941|Homo sapiens protein ( Homo sapiens ...    30   6.6  

>BC001666-1|AAH01666.1|  941|Homo sapiens PRP6 pre-mRNA processing
           factor 6 homolog (S. cerevisiae) protein.
          Length = 941

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 501 HLPGPAQLWNVLVGMDHRRPHSLRLQRTNE-CPNSVILFKSSTKSELY 641
           H+P   +LW   V ++      + L R  E CP SV L+ +  + E Y
Sbjct: 399 HVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLETY 446


>AL356790-1|CAH71582.1|  941|Homo sapiens PRP6 pre-mRNA processing
           factor 6 homolog (S. cerevisiae) protein.
          Length = 941

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 501 HLPGPAQLWNVLVGMDHRRPHSLRLQRTNE-CPNSVILFKSSTKSELY 641
           H+P   +LW   V ++      + L R  E CP SV L+ +  + E Y
Sbjct: 399 HVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLETY 446


>AL355803-2|CAC16610.2|  941|Homo sapiens PRP6 pre-mRNA processing
           factor 6 homolog (S. cerevisiae) protein.
          Length = 941

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 501 HLPGPAQLWNVLVGMDHRRPHSLRLQRTNE-CPNSVILFKSSTKSELY 641
           H+P   +LW   V ++      + L R  E CP SV L+ +  + E Y
Sbjct: 399 HVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLETY 446


>AL118506-15|CAI21906.1|  941|Homo sapiens PRP6 pre-mRNA processing
           factor 6 homolog (S. cerevisiae) protein.
          Length = 941

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 501 HLPGPAQLWNVLVGMDHRRPHSLRLQRTNE-CPNSVILFKSSTKSELY 641
           H+P   +LW   V ++      + L R  E CP SV L+ +  + E Y
Sbjct: 399 HVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLETY 446


>AF221842-1|AAF66128.1|  941|Homo sapiens U5 snRNP-associated 102
           kDa protein protein.
          Length = 941

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 501 HLPGPAQLWNVLVGMDHRRPHSLRLQRTNE-CPNSVILFKSSTKSELY 641
           H+P   +LW   V ++      + L R  E CP SV L+ +  + E Y
Sbjct: 399 HVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLETY 446


>AF026031-1|AAD01798.1|  941|Homo sapiens putative mitochondrial
           outer membrane protein import receptor protein.
          Length = 941

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 501 HLPGPAQLWNVLVGMDHRRPHSLRLQRTNE-CPNSVILFKSSTKSELY 641
           H+P   +LW   V ++      + L R  E CP SV L+ +  + E Y
Sbjct: 399 HVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLETY 446


>AB019219-1|BAA37140.1|  941|Homo sapiens protein ( Homo sapiens
           mRNA, complete cds, similar to yeast pre-mRNA splicing
           factors, Prp1/Zer1 and Prp6. ).
          Length = 941

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 501 HLPGPAQLWNVLVGMDHRRPHSLRLQRTNE-CPNSVILFKSSTKSELY 641
           H+P   +LW   V ++      + L R  E CP SV L+ +  + E Y
Sbjct: 399 HVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLETY 446


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,794,385
Number of Sequences: 237096
Number of extensions: 1803628
Number of successful extensions: 3544
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3544
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)