Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0903
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical ...    24   9.6  

>AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical
           protein Y66H1B.3 protein.
          Length = 1084

 Score = 23.8 bits (49), Expect(2) = 9.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 401 SHII*HRVKSSLGINYTAVLH 463
           +HI+ H  K  LG+ +T +LH
Sbjct: 110 THIVDHNKKLILGLVWTLILH 130



 Score = 21.8 bits (44), Expect(2) = 9.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 356 DFSSFLKIVSYIRLLSH 406
           DFS  LK+++  ++LSH
Sbjct: 53  DFSDGLKLIALAQVLSH 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,594,344
Number of Sequences: 27780
Number of extensions: 300882
Number of successful extensions: 698
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)