BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0903 (679 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical ... 24 9.6 >AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical protein Y66H1B.3 protein. Length = 1084 Score = 23.8 bits (49), Expect(2) = 9.6 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = +2 Query: 401 SHII*HRVKSSLGINYTAVLH 463 +HI+ H K LG+ +T +LH Sbjct: 110 THIVDHNKKLILGLVWTLILH 130 Score = 21.8 bits (44), Expect(2) = 9.6 Identities = 8/17 (47%), Positives = 13/17 (76%) Frame = +2 Query: 356 DFSSFLKIVSYIRLLSH 406 DFS LK+++ ++LSH Sbjct: 53 DFSDGLKLIALAQVLSH 69 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,594,344 Number of Sequences: 27780 Number of extensions: 300882 Number of successful extensions: 698 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 685 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 698 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1539654388 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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