Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0903
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.66 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.66 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 197  IPKTEIMQIDTEIKNNAGY*HNVKIICLICLVYIRTTFDQYKF 325
            I  +E  ++DTE+ +  GY HNV   C I    ++ T D+  F
Sbjct: 1662 ISDSESGRLDTEM-STWGYHHNVNKHCTIHRTQVKETDDKICF 1703


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 502 IFPVQPSSGMFSWGWIIADHTPYDFK 579
           IFP  P S  FS   +  +HTP   K
Sbjct: 300 IFPPTPGSFNFSMAALATEHTPLSVK 325


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +2

Query: 473 GKGQRVRCDTSSRSSPALECSRGDGSSPTTLP 568
           G G  V C       P +   R DGS+   +P
Sbjct: 18  GTGAVVECQARGNPQPDIIWVRADGSAVGDVP 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,729
Number of Sequences: 438
Number of extensions: 3971
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)