Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0903
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34315.1 68415.m04200 disease resistance protein-related simi...    30   1.2  
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi...    29   2.1  
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote...    28   4.9  
At5g19730.1 68418.m02346 pectinesterase family protein contains ...    28   4.9  
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila...    27   8.6  

>At2g34315.1 68415.m04200 disease resistance protein-related similar
           to SP|P54120 AIG1 protein {Arabidopsis thaliana}
          Length = 246

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 341 NLQHQDFSSFLKIVSYIRLLSHII*HRVKSSLGINYT-AVLHALK 472
           N+  QDF S + IV  ++LL H+   + ++S G  YT  V HALK
Sbjct: 14  NMADQDFPSVINIVLLVKLLDHVAATQNQNS-GHPYTHQVEHALK 57


>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 455

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 23/99 (23%), Positives = 45/99 (45%)
 Frame = +1

Query: 367 FSQNSFIYSLIVAHNLTSC*KFTRN*LYRSIARTQGQRAKGAM*HIFPVQPSSGMFSWGW 546
           FSQ   I++ I+ HNLT+     R  +  S++ + G+    ++  +F    S   F+W  
Sbjct: 33  FSQLKQIHTKIIKHNLTNDQLLVRQLI--SVSSSFGETQYASL--VFNQLQSPSTFTWNL 88

Query: 547 IIADHTPYDFKEQMNVLTVSYSLNHQQNLNSISNHFPIK 663
           +I   +      +  +L +   ++HQ   +  +  F IK
Sbjct: 89  MIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFVIK 127


>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 654

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = +2

Query: 275 CLICLVYIRTTFDQYKFKPKYINLQHQDFSSFLKIVSYIRLLS-HII*HRVKSSLGINYT 451
           CL+  +++ TTF  Y      +N   Q   +F   V ++R L+ +   H  KS +G+  T
Sbjct: 26  CLVSFLFVTTTFCSYAIAD--LNSDRQALLAFAASVPHLRRLNWNSTNHICKSWVGVTCT 83

Query: 452 A---VLHALKGKG 481
           +    +HAL+  G
Sbjct: 84  SDGTSVHALRLPG 96


>At5g19730.1 68418.m02346 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 383

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +2

Query: 368 FLKIVSYIRLLSHII*HRVKSSLGINYTAVLHALKGKGQRVRCDTSSRSSPALECSR 538
           F+K V ++  L H +    K+ L  +YT  +H    KG   +   +  S P +   R
Sbjct: 57  FMKWVRFVGSLKHSVFKAAKNKLFPSYTLTVHKKSNKGDFTKIQDAIDSLPLINFVR 113


>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
           to pre-mRNA splicing factor pre-mRNA splicing factor
           prp1 (SP:Q12381) [Fission yeast]
          Length = 1029

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 468 SRAKGKGCDVTHLPGPAQLWNVLVGMDHRRPHSLRLQRTNE-CPNSVILFKSSTKSELY 641
           SR   KG +  H+P   +LW  +V + +     + L R  E CP  + L+ +  + E Y
Sbjct: 468 SRVLRKGLE--HIPDSVRLWKAVVELANEEDARILLHRAVECCPLHLELWVALARLETY 524


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,349,980
Number of Sequences: 28952
Number of extensions: 263795
Number of successful extensions: 573
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)