BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0903 (679 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g34315.1 68415.m04200 disease resistance protein-related simi... 30 1.2 At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi... 29 2.1 At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote... 28 4.9 At5g19730.1 68418.m02346 pectinesterase family protein contains ... 28 4.9 At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila... 27 8.6 >At2g34315.1 68415.m04200 disease resistance protein-related similar to SP|P54120 AIG1 protein {Arabidopsis thaliana} Length = 246 Score = 30.3 bits (65), Expect = 1.2 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = +2 Query: 341 NLQHQDFSSFLKIVSYIRLLSHII*HRVKSSLGINYT-AVLHALK 472 N+ QDF S + IV ++LL H+ + ++S G YT V HALK Sbjct: 14 NMADQDFPSVINIVLLVKLLDHVAATQNQNS-GHPYTHQVEHALK 57 >At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile: PF01535 PPR repeat Length = 455 Score = 29.5 bits (63), Expect = 2.1 Identities = 23/99 (23%), Positives = 45/99 (45%) Frame = +1 Query: 367 FSQNSFIYSLIVAHNLTSC*KFTRN*LYRSIARTQGQRAKGAM*HIFPVQPSSGMFSWGW 546 FSQ I++ I+ HNLT+ R + S++ + G+ ++ +F S F+W Sbjct: 33 FSQLKQIHTKIIKHNLTNDQLLVRQLI--SVSSSFGETQYASL--VFNQLQSPSTFTWNL 88 Query: 547 IIADHTPYDFKEQMNVLTVSYSLNHQQNLNSISNHFPIK 663 +I + + +L + ++HQ + + F IK Sbjct: 89 MIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFVIK 127 >At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein kinase, putative Length = 654 Score = 28.3 bits (60), Expect = 4.9 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Frame = +2 Query: 275 CLICLVYIRTTFDQYKFKPKYINLQHQDFSSFLKIVSYIRLLS-HII*HRVKSSLGINYT 451 CL+ +++ TTF Y +N Q +F V ++R L+ + H KS +G+ T Sbjct: 26 CLVSFLFVTTTFCSYAIAD--LNSDRQALLAFAASVPHLRRLNWNSTNHICKSWVGVTCT 83 Query: 452 A---VLHALKGKG 481 + +HAL+ G Sbjct: 84 SDGTSVHALRLPG 96 >At5g19730.1 68418.m02346 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase Length = 383 Score = 28.3 bits (60), Expect = 4.9 Identities = 15/57 (26%), Positives = 25/57 (43%) Frame = +2 Query: 368 FLKIVSYIRLLSHII*HRVKSSLGINYTAVLHALKGKGQRVRCDTSSRSSPALECSR 538 F+K V ++ L H + K+ L +YT +H KG + + S P + R Sbjct: 57 FMKWVRFVGSLKHSVFKAAKNKLFPSYTLTVHKKSNKGDFTKIQDAIDSLPLINFVR 113 >At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar to pre-mRNA splicing factor pre-mRNA splicing factor prp1 (SP:Q12381) [Fission yeast] Length = 1029 Score = 27.5 bits (58), Expect = 8.6 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +3 Query: 468 SRAKGKGCDVTHLPGPAQLWNVLVGMDHRRPHSLRLQRTNE-CPNSVILFKSSTKSELY 641 SR KG + H+P +LW +V + + + L R E CP + L+ + + E Y Sbjct: 468 SRVLRKGLE--HIPDSVRLWKAVVELANEEDARILLHRAVECCPLHLELWVALARLETY 524 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,349,980 Number of Sequences: 28952 Number of extensions: 263795 Number of successful extensions: 573 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 566 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 573 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1428369392 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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