Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0902
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    27   2.6  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    27   2.6  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   3.4  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    26   6.0  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   6.0  

>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 238 HWKLTCHCVHWASTHRAMYAIYNLL 312
           H  L C   +W+ THRAM+ +++++
Sbjct: 152 HCVLRCCLSNWSWTHRAMFILHSMV 176


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 375 ICLKHKNILSIMKFQTLTILLQ*VINSIHCAMCTRP 268
           +CL H +I S+  FQT   LL  V+   H + C  P
Sbjct: 48  LCLSHPSINSLSSFQTYHQLLC-VLEQKHLSECVAP 82


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 622 IRLEW*CRRGKRCHSYVCTNITRPI 548
           IR  W  R+GK+CHS   +  T+PI
Sbjct: 162 IRCIW--RKGKKCHSAYISERTKPI 184


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 363 HKNILSIMKFQTLTILLQ*VINSIHCAMCTRPMNAMTS 250
           H + L ++ + + T+ L  +  +I C  CT P   +TS
Sbjct: 205 HSSKLELLYYISSTLTLTSLDQNIRCTRCTIPKRVITS 242


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 423 PPRSILE-VCSFCFTSYNCTTRPYK 494
           PPR+ LE +CS C T  N T  P +
Sbjct: 467 PPRASLETLCSLCVTLINDTFEPVR 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,151
Number of Sequences: 5004
Number of extensions: 57165
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)