Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0902
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33716| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_33716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 922

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 548 NRSSYVCTNITVAPLAPPTLPFQP 619
           N+SS  C +  +AP+ PP  PF P
Sbjct: 436 NQSSSHCNSSQLAPMTPPRNPFSP 459


>SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = +1

Query: 196 NFKD*TVENAMHVVHWKLTCHCVHWASTHRAMYAIYNLLQ*YC*CLEFHNA 348
           N    T   A H   +  T    H+ +TH A YA Y L   YC  L  H A
Sbjct: 24  NHNSHTYFTATHPARYSKTTRYAHY-NTHSARYAHYTLNYSYCTLLTPHAA 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,365,043
Number of Sequences: 59808
Number of extensions: 418426
Number of successful extensions: 1034
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)