Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0902
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64848-3|AAB04882.1|  323|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AJ276028-1|CAC81655.1|  816|Caenorhabditis elegans TRP homlogous...    29   4.3  
AF040654-5|AAN65302.2|  816|Caenorhabditis elegans Trp (transien...    29   4.3  
AF040654-4|AAN65303.2|  886|Caenorhabditis elegans Trp (transien...    29   4.3  
AL132860-4|CAB60496.1|  762|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U64848-3|AAB04882.1|  323|Caenorhabditis elegans Hypothetical
           protein C50E3.7 protein.
          Length = 323

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 281 IAQCMLFITYCNNIVNVWNFIMLSIFLCF 367
           ++QC L++ YC+N  ++    ++S+  CF
Sbjct: 153 LSQCSLYVDYCSNFFSLTVTFLMSLNRCF 181


>AJ276028-1|CAC81655.1|  816|Caenorhabditis elegans TRP homlogous
           cation channel proteinprotein.
          Length = 816

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 287 QCMLFITYCNNIVNVWNFIMLSIFLC 364
           +C L+  YC N+ N+ +FI  S++LC
Sbjct: 438 ECGLY-NYCRNLWNILDFITNSLYLC 462


>AF040654-5|AAN65302.2|  816|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 2, isoform a
           protein.
          Length = 816

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 287 QCMLFITYCNNIVNVWNFIMLSIFLC 364
           +C L+  YC N+ N+ +FI  S++LC
Sbjct: 438 ECGLY-NYCRNLWNILDFITNSLYLC 462


>AF040654-4|AAN65303.2|  886|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 2, isoform b
           protein.
          Length = 886

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 287 QCMLFITYCNNIVNVWNFIMLSIFLC 364
           +C L+  YC N+ N+ +FI  S++LC
Sbjct: 438 ECGLY-NYCRNLWNILDFITNSLYLC 462


>AL132860-4|CAB60496.1|  762|Caenorhabditis elegans Hypothetical
           protein Y56A3A.5 protein.
          Length = 762

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 592 CPAYITIPTLFNYSVVLTTG 651
           CP++IT    F Y V+LTTG
Sbjct: 629 CPSFITPAQPFKYPVLLTTG 648


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,393,081
Number of Sequences: 27780
Number of extensions: 318371
Number of successful extensions: 770
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)