BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0902 (701 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U64848-3|AAB04882.1| 323|Caenorhabditis elegans Hypothetical pr... 29 3.2 AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous... 29 4.3 AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transien... 29 4.3 AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transien... 29 4.3 AL132860-4|CAB60496.1| 762|Caenorhabditis elegans Hypothetical ... 27 9.8 >U64848-3|AAB04882.1| 323|Caenorhabditis elegans Hypothetical protein C50E3.7 protein. Length = 323 Score = 29.1 bits (62), Expect = 3.2 Identities = 9/29 (31%), Positives = 19/29 (65%) Frame = +2 Query: 281 IAQCMLFITYCNNIVNVWNFIMLSIFLCF 367 ++QC L++ YC+N ++ ++S+ CF Sbjct: 153 LSQCSLYVDYCSNFFSLTVTFLMSLNRCF 181 >AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous cation channel proteinprotein. Length = 816 Score = 28.7 bits (61), Expect = 4.3 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +2 Query: 287 QCMLFITYCNNIVNVWNFIMLSIFLC 364 +C L+ YC N+ N+ +FI S++LC Sbjct: 438 ECGLY-NYCRNLWNILDFITNSLYLC 462 >AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transient receptor potential)channel family protein 2, isoform a protein. Length = 816 Score = 28.7 bits (61), Expect = 4.3 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +2 Query: 287 QCMLFITYCNNIVNVWNFIMLSIFLC 364 +C L+ YC N+ N+ +FI S++LC Sbjct: 438 ECGLY-NYCRNLWNILDFITNSLYLC 462 >AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transient receptor potential)channel family protein 2, isoform b protein. Length = 886 Score = 28.7 bits (61), Expect = 4.3 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +2 Query: 287 QCMLFITYCNNIVNVWNFIMLSIFLC 364 +C L+ YC N+ N+ +FI S++LC Sbjct: 438 ECGLY-NYCRNLWNILDFITNSLYLC 462 >AL132860-4|CAB60496.1| 762|Caenorhabditis elegans Hypothetical protein Y56A3A.5 protein. Length = 762 Score = 27.5 bits (58), Expect = 9.8 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +1 Query: 592 CPAYITIPTLFNYSVVLTTG 651 CP++IT F Y V+LTTG Sbjct: 629 CPSFITPAQPFKYPVLLTTG 648 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,393,081 Number of Sequences: 27780 Number of extensions: 318371 Number of successful extensions: 770 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 740 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 770 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1624019012 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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