Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0902
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55830.1 68418.m06957 lectin protein kinase, putative similar...    29   2.3  
At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1) c...    29   3.9  
At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1) c...    29   3.9  
At4g15320.1 68417.m02344 cellulose synthase family protein simil...    27   9.1  

>At5g55830.1 68418.m06957 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 681

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = -3

Query: 546 FHSPRLVRFGLLGNRSPLYRAVLCNYNL*NKKNRPQV*SEEVYLSIGKSKLPFNYNII-C 370
           FHS R++  G  GN   +YRA+  +    +   R +  S E     GK++     +II C
Sbjct: 365 FHSSRVIGRGAFGN---VYRAMFVSSGTISAVKRSRHNSTE-----GKTEFLAELSIIAC 416

Query: 369 LKHKNILSI 343
           L+HKN++ +
Sbjct: 417 LRHKNLVQL 425


>At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1)
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH1 (SUVH1)  GI:13517742
          Length = 670

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 485 PCCAIITCKTKRTDLKYRARRYIFRSVSRNYHL 387
           P C   TCK K T +  + R  +F++ +R + L
Sbjct: 477 PSCPCSTCKNKVTQMGVKVRLEVFKTANRGWGL 509


>At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1)
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH1 (SUVH1)  GI:13517742
          Length = 670

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 485 PCCAIITCKTKRTDLKYRARRYIFRSVSRNYHL 387
           P C   TCK K T +  + R  +F++ +R + L
Sbjct: 477 PSCPCSTCKNKVTQMGVKVRLEVFKTANRGWGL 509


>At4g15320.1 68417.m02344 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -2
           [gi:9622876], -1 [gi:9622874]
          Length = 828

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 393 PFNYNIICLKHKNILSIMKFQTLTILLQ*VINSIHCAMCTRPMN 262
           P+  N+ C  + N   +++ Q + + LQ   NS HCA    P N
Sbjct: 377 PYMLNVDCDMYANEPDVVR-QAMCVFLQNSKNSNHCAFVQFPQN 419


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,011,913
Number of Sequences: 28952
Number of extensions: 278428
Number of successful extensions: 560
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)