Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0900
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    25   2.7  
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    25   3.6  

>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 303 GLWINVNGYNTNNFLVDRSLKFY 235
           G W  V    TN FL+ R+ KFY
Sbjct: 311 GPWYAVPATGTNMFLIARAWKFY 333


>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 196 YHIYELFECAIRDFHQIELKV*CKIFDFL*FVNKIGHLIICQH 68
           Y  Y+  EC  +  +    K  C++FDFL     I + I+C H
Sbjct: 121 YGFYD--ECQTKYGNANVWKYCCQVFDFLTLAAVIDNKILCVH 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,160,605
Number of Sequences: 5004
Number of extensions: 18954
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)