Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0900
         (363 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_38003| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  
SB_52168| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  

>SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1239

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -3

Query: 202 FFYHIYELFEC----AIRDFHQIELKV*CKIFDFL*FVNKIGHLIICQ 71
           FFY ++    C    ++  F+Q+  +V C+    L F  ++ H + CQ
Sbjct: 683 FFYQVFHRITCQSIGSLTFFYQVFHRVTCQSIGSLTFFYQVFHRVTCQ 730



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -3

Query: 202 FFYHIYELFEC----AIRDFHQIELKV*CKIFDFL*FVNKIGHLIICQHL 65
           FFY ++    C    ++  F+Q+  ++ C+    L F  ++ H + CQ +
Sbjct: 665 FFYQVFHRVTCQSNGSLTFFYQVFHRITCQSIGSLTFFYQVFHRVTCQSI 714


>SB_38003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -3

Query: 202 FFYHIYELFEC----AIRDFHQIELKV*CKIFDFL*FVNKIGHLIICQHL 65
           FFY ++    C    ++  F+Q+  +V C+    L F  ++ H I CQ +
Sbjct: 104 FFYQVFHRITCQSNGSLTFFYQVFHRVTCQSNGSLTFFYQVFHRITCQSI 153


>SB_52168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +1

Query: 160 PLWHIQIIHKCDKKIIVLN*YKKNCIKLQRTINEKIVCI 276
           PL   +I+ + DKK+  +   K+N  ++++ +  K+V +
Sbjct: 83  PLIRGKILERFDKKLATMGCTKENLFEMEKKLEVKLVAV 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,795,619
Number of Sequences: 59808
Number of extensions: 114822
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)