Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0900
         (363 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family...    28   2.1  
At4g11890.3 68417.m01892 protein kinase family protein contains ...    26   6.5  
At4g11890.2 68417.m01891 protein kinase family protein contains ...    26   6.5  
At4g11890.1 68417.m01890 protein kinase family protein contains ...    26   6.5  
At1g44080.1 68414.m05088 F-box protein-related / C-type lectin-r...    26   8.6  

>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
           protein similar to SP|Q28141 ATP-dependent RNA helicase
           A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
           taurus}; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1015

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 223 YTNLRQ*FFYHIYELFECAIRDFHQ 149
           + N+ Q  FYH+ EL+E  +  FH+
Sbjct: 598 FHNIAQSSFYHVSELYEDTLSSFHR 622


>At4g11890.3 68417.m01892 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 354

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 360 CRNITDE*ALNIYQV*CVKGLWINVNGYNTNNFLVDRSLK 241
           CRNI D  A  +  +    GLW+        N L+D  LK
Sbjct: 139 CRNIIDGIARGLRYLHEESGLWVVHRDIKPGNILLDSDLK 178


>At4g11890.2 68417.m01891 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 352

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 360 CRNITDE*ALNIYQV*CVKGLWINVNGYNTNNFLVDRSLK 241
           CRNI D  A  +  +    GLW+        N L+D  LK
Sbjct: 137 CRNIIDGIARGLRYLHEESGLWVVHRDIKPGNILLDSDLK 176


>At4g11890.1 68417.m01890 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 351

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 360 CRNITDE*ALNIYQV*CVKGLWINVNGYNTNNFLVDRSLK 241
           CRNI D  A  +  +    GLW+        N L+D  LK
Sbjct: 136 CRNIIDGIARGLRYLHEESGLWVVHRDIKPGNILLDSDLK 175


>At1g44080.1 68414.m05088 F-box protein-related / C-type
           lectin-related contains F-box domain Pfam:PF00646,
           PF00059: Lectin C-type domain
          Length = 347

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 175 QIIHKCDKKIIVLN*YKKNCIKLQRTINEKIVC 273
           +++  C +  +V   YKK C+K  R + E+ VC
Sbjct: 227 RLVEYCGELCVVHRFYKKFCVK--RVLTERTVC 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,530,710
Number of Sequences: 28952
Number of extensions: 83966
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)