Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0896
(230 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.19 |||mitochondrial ribosomal protein subunit L27|Schiz... 25 1.0
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 25 1.8
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 24 2.3
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 24 2.3
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 24 3.1
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 23 4.1
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 23 4.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 23 5.4
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 23 5.4
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 23 5.4
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 23 7.2
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 23 7.2
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 23 7.2
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 22 9.5
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 22 9.5
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 22 9.5
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 22 9.5
>SPAC3A12.19 |||mitochondrial ribosomal protein subunit
L27|Schizosaccharomyces pombe|chr 1|||Manual
Length = 93
Score = 25.4 bits (53), Expect = 1.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 137 QWRRKRTYVPAQPILEVAPKIDDSVKPTE 223
QW R RT+VP E+ P + ++ T+
Sbjct: 44 QWSRVRTFVPPSGDCELLPFVSRRIQATK 72
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 179 ELVEREHTSFSSATGIAKLTSAKAM 105
E ++R+H++ S A +A+ AKA+
Sbjct: 607 EAIQRQHSTASEALSVAQSMKAKAL 631
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 24.2 bits (50), Expect = 2.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 22 YFNNLCQCFKKRGNVTGSI 78
Y N+ CQ ++ R NVTG+I
Sbjct: 285 YDNHKCQVWRCRFNVTGTI 303
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 24.2 bits (50), Expect = 2.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 166 GNIRPFPPPLASPNSHP 116
G+IRPFP SPN +P
Sbjct: 436 GSIRPFPISEHSPNINP 452
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 154 PFPPPLASPNSHPRRLCTIVRP 89
P PPP+ + P L TI+ P
Sbjct: 160 PAPPPMMKKPAAPNSLSTIIYP 181
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 121 HPRRLCTIVRPSF*IWIL 68
HPRR T++ PS W+L
Sbjct: 585 HPRRCFTLLFPSGATWVL 602
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/38 (23%), Positives = 18/38 (47%)
Frame = -1
Query: 173 VEREHTSFSSATGIAKLTSAKAMHNSKTFILNMDPVTL 60
+ ++H+ F AKL +A+H K + + T+
Sbjct: 370 ISQDHSVFREVNPSAKLEEERALHEEKLMKMEAEMKTI 407
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -2
Query: 169 SGNIRPFPPPLASPNSHPRRLCTIVRPS 86
S N+ PPP+ N+ P RPS
Sbjct: 1372 SSNVHAPPPPVQPMNAMPSHNAVNARPS 1399
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 31 NLCQCFKKRGNVTGSIFKMKVLLLCIAFADVS 126
N+C F N+ IF M +L F D+S
Sbjct: 1219 NVCIVFSPTLNIPSDIFMMLILNYDHIFTDIS 1250
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 121 HPRRLCTIVRPSF*IWIL 68
HPRR T++ PS W+L
Sbjct: 610 HPRRSFTLLFPSKTTWVL 627
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 206 SHQFWARLLELVERE 162
SH FW + LE ER+
Sbjct: 143 SHPFWDKYLEFEERQ 157
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 87 EGLTIVHSLRGCEFGDASGG 146
EG + ++RGC+ +A GG
Sbjct: 712 EGALVASTMRGCKAINAGGG 731
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +3
Query: 90 GLTIVHSLRGCEFGDASGG 146
GL H+L C+F GG
Sbjct: 166 GLKAFHALTACKFAGTEGG 184
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 22.2 bits (45), Expect = 9.5
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = +1
Query: 49 KKRGNVTGSIFKMKVLLLCIAFADVSLAMPVAEEKDVCS 165
K RG V + F + CI D S + + D CS
Sbjct: 287 KYRGTVFPACFYDTLYDYCIGLVDPSGILSAKQPNDACS 325
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 22.2 bits (45), Expect = 9.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 40 QCFKKRGNVTG-SIFKMKVLLLCIAFADVSLAMP 138
QCF K+GN T + K+ L+ + A +SL P
Sbjct: 5 QCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQP 38
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 22.2 bits (45), Expect = 9.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 40 QCFKKRGNVTG-SIFKMKVLLLCIAFADVSLAMP 138
QCF K+GN T + K+ L+ + A +SL P
Sbjct: 5 QCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQP 38
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 128 WRCQWRRKRTYVPAQPILEVAP 193
++C +RRK Y +QP + P
Sbjct: 408 YKCDFRRKLIYFRSQPGMRPLP 429
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 934,557
Number of Sequences: 5004
Number of extensions: 16584
Number of successful extensions: 47
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -