Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0896
(230 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726... 30 0.23
02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,762... 27 2.8
01_06_0181 - 27262425-27263337,27263452-27263633 27 2.8
01_01_0369 - 2886060-2886272,2886721-2887434 27 2.8
11_06_0690 + 26303733-26306540 26 3.7
05_05_0168 + 22875488-22876072 26 4.9
12_01_0449 + 3548389-3548503,3549282-3549425,3550087-3550212,355... 25 6.5
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 25 6.5
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 25 6.5
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 25 8.6
02_05_0762 + 31562589-31563272 25 8.6
>09_06_0087 +
20771329-20771450,20771462-20771771,20771893-20772672,
20772854-20774002
Length = 786
Score = 30.3 bits (65), Expect = 0.23
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 204 SSILGATSRIG*AGTYVLFLRHWHRQTHIR 115
+S+LG + R G + F RHWHR H R
Sbjct: 220 ASVLGWSGRFSVEGASISF-RHWHRSVHAR 248
>02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,
7622466-7622516,7622936-7623070,7623161-7623184,
7623341-7623452,7623776-7623901,7624004-7624053,
7624339-7624497,7624582-7624677,7624751-7624866,
7624907-7624984,7624985-7625108,7625193-7625306,
7625423-7625503,7625616-7625756,7625834-7625848
Length = 1397
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 46 FKKRGNVTGSIFKMKVLLLCIAFADVSLAMPVAEEKDVCSRST 174
F + N+TG I + ++ +C+A +LA P A EK +ST
Sbjct: 1312 FDQGDNITGKISREEIAFICVA----ALASPNAVEKTFEVKST 1350
>01_06_0181 - 27262425-27263337,27263452-27263633
Length = 364
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 175 WLSGNIRPFPPPL 137
WL +RPFPPPL
Sbjct: 263 WLKDILRPFPPPL 275
>01_01_0369 - 2886060-2886272,2886721-2887434
Length = 308
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 148 PPPLASPNSHPRRLCTIVRPS 86
PPP P HP C+ +RP+
Sbjct: 130 PPPPPPPPGHPAYQCSTIRPT 150
>11_06_0690 + 26303733-26306540
Length = 935
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 204 SSILGATSRIG*AGTYVLFLRHWHRQTHIR 115
+++L + R+ AG + F R WHR H R
Sbjct: 291 TTVLNQSGRLTVAGAKISF-RRWHRSVHAR 319
>05_05_0168 + 22875488-22876072
Length = 194
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -1
Query: 194 WARLLELVEREHTSFSSATGIAKLTSAKAMHNSKTFILNMDPVTLPR 54
WA + E +S SSA G A +A +MH + PVTL R
Sbjct: 56 WACHRYTPDPEASSSSSAAGAAGAAAAASMHGLDAEAIGGLPVTLYR 102
>12_01_0449 +
3548389-3548503,3549282-3549425,3550087-3550212,
3550468-3550619,3551118-3551402
Length = 273
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Frame = -1
Query: 209 PSHQFW----ARLLELVEREHTSF--SSATGIAKLTSAKAMHNSKTF 87
PS + W A+ L + E +F SAT L A NSKTF
Sbjct: 176 PSGEVWVGNPAKFLRKLTEEEIAFIAQSATNYINLAQVHAAENSKTF 222
>07_03_1530 +
27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 143 RRKRTYVPAQPILEVAPKIDDSVKP 217
R+ T + PI+ VAPK D+ ++P
Sbjct: 365 RKPHTNHISNPIISVAPKTDEELQP 389
>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 43 CFKKRGNVTGSIFKMKVLLLCIAFADVSLAMPVAEEKDVCSRST 174
C K + N + + AFA LA+P EEK + + T
Sbjct: 1582 CTKSKPNCNACPMRAECKHFASAFASARLALPGPEEKSLVTSGT 1625
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 157 RPFPPPLASPNSHPRR 110
R PPP ASP+ H RR
Sbjct: 855 RSAPPPPASPDRHSRR 870
>02_05_0762 + 31562589-31563272
Length = 227
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 166 GNIRPFPPPLASPNSHPRRLCT 101
G +R PPPL S RR CT
Sbjct: 82 GMMRRLPPPLPSLRGAMRRTCT 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,148,540
Number of Sequences: 37544
Number of extensions: 116003
Number of successful extensions: 477
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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