Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0896
         (230 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43334| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.0  
SB_7912| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   5.5  
SB_48630| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  
SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)                 25   9.6  
SB_22736| Best HMM Match : F5_F8_type_C (HMM E-Value=6.4e-24)          25   9.6  
SB_11926| Best HMM Match : UPAR_LY6 (HMM E-Value=0.0022)               25   9.6  
SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)              25   9.6  
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)                 25   9.6  
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.6  

>SB_43334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 494

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = +1

Query: 25  FNNLCQCFKKRGNVTGSIFKMKVLLLCIAFADVSLAMPVAEEKDVCSRSTNSRSRAQN 198
           F+N     KK+ N +G + K ++L L + +   +L  P   ++D   +  N +   Q+
Sbjct: 33  FDNTSFSGKKKANGSGKLEKAEILELTVEYVKKNLQNPNQIQQDGTDKGANEKDNNQH 90


>SB_7912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1020

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 194 WARLLELVEREHTSFSSATGIAKLTSAKAM-HNS 96
           WA LLE +E    S SS   +A L S + M H+S
Sbjct: 493 WALLLEFIESAALSKSSEVALAALKSFQEMVHDS 526


>SB_48630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 151 FPPPLASPNSHPRRLCTIVRPS 86
           +PPPL+ PN   R   + V+PS
Sbjct: 61  YPPPLSHPNDPTRGFYSPVQPS 82


>SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)
          Length = 1033

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 216 GLTESSILGATSRIG*AGTYVLFLRHW 136
           GLTE  +LGA   +G A  Y +   +W
Sbjct: 473 GLTEREMLGALRIMGYANNYSISTAYW 499


>SB_22736| Best HMM Match : F5_F8_type_C (HMM E-Value=6.4e-24)
          Length = 1039

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 99   IVHSLRGCEFGDASGGGKGRMF 164
            I +S RG EF D + GG+ R+F
Sbjct: 973  ITYSPRGIEFYDYTEGGRTRIF 994


>SB_11926| Best HMM Match : UPAR_LY6 (HMM E-Value=0.0022)
          Length = 190

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 55  RGNVTGSIFKMKVLLLCIAFADVSLAMPVAEEKDVCS 165
           R +VT    K+ V+LLC+A AD + +     +  VCS
Sbjct: 54  RMHVTQKNMKIFVILLCLAVADFAGSSENPNDCFVCS 90


>SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)
          Length = 951

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 157 RPFPPPLASPNSHP 116
           RPFPPP+  P   P
Sbjct: 782 RPFPPPMMGPMQRP 795


>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
          Length = 769

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 209 PSHQFWARLLELVEREHTSFSSATGIAKLTSAKAMHNSKT 90
           P  + W + +EL+E E T+ S+   +A +T+ +      T
Sbjct: 149 PPLRLWQKPIELIEPEPTTQSAVESVACVTAEQTAQAPST 188


>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1670

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 209 PSHQFWARLLELVEREHTSFSSATGIAKLTSAKAMHNSKT 90
           P  + W + +EL+E E T+ S+   +A +T+ +      T
Sbjct: 816 PPLRLWQKPIELIEPEPTTQSAVESVACVTAEQTAQAPST 855


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,986,780
Number of Sequences: 59808
Number of extensions: 125934
Number of successful extensions: 295
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 16,821,457
effective HSP length: 54
effective length of database: 13,591,825
effective search space used: 299020150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)