Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0896
(230 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024810-16|AAO21412.2| 684|Caenorhabditis elegans Cdt (s. pomb... 27 2.4
AC024810-15|AAF60769.1| 741|Caenorhabditis elegans Cdt (s. pomb... 27 2.4
AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical ... 27 2.4
U58734-4|AAB52501.1| 274|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical pr... 26 4.1
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass... 26 4.1
AF047657-6|AAK18946.1| 337|Caenorhabditis elegans Serpentine re... 25 5.5
Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p... 25 7.2
Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical p... 25 7.2
Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z19157-3|CAA79566.3| 395|Caenorhabditis elegans Hypothetical pr... 25 7.2
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 25 7.2
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 25 7.2
U97008-2|AAB52309.1| 336|Caenorhabditis elegans Serpentine rece... 25 9.5
U64847-7|AAB04876.1| 718|Caenorhabditis elegans Acyltransferase... 25 9.5
AF039038-3|AAK21432.1| 145|Caenorhabditis elegans Hypothetical ... 25 9.5
>AC024810-16|AAO21412.2| 684|Caenorhabditis elegans Cdt (s. pombe
licensing factor)homolog protein 1, isoform b protein.
Length = 684
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 206 SHQFWARLLELVEREHTSFSSATGIAKLTSAKAMH 102
+H F +L +V + HT F + G+ ++ K MH
Sbjct: 405 AHVFRYKLASIVTKCHTEFLESQGLCASSNIKRMH 439
>AC024810-15|AAF60769.1| 741|Caenorhabditis elegans Cdt (s. pombe
licensing factor)homolog protein 1, isoform a protein.
Length = 741
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 206 SHQFWARLLELVEREHTSFSSATGIAKLTSAKAMH 102
+H F +L +V + HT F + G+ ++ K MH
Sbjct: 405 AHVFRYKLASIVTKCHTEFLESQGLCASSNIKRMH 439
>AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical
protein Y41G9A.5 protein.
Length = 402
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 170 EREHTSFSSATGIAKLTSAKAMHNSKTFILNMDPVTLPRF 51
E+E S + + I TSA +S+T +L D +T F
Sbjct: 199 EKEEASIENVSTIPSTTSATENTSSETSVLEKDEITSSEF 238
>U58734-4|AAB52501.1| 274|Caenorhabditis elegans Hypothetical
protein T27A10.2 protein.
Length = 274
Score = 26.2 bits (55), Expect = 3.1
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 50 KSGVTSQDPYLK*RSYYCA*PSRM*VWRCQWRRKRTYVPAQPILEVAPKIDDSV 211
+S V+S + SYY RM + CQ R + +PAQ I E ++ S+
Sbjct: 148 RSSVSSGSSFGSNHSYYSE-GMRMRILLCQSRNQVDNIPAQAIRETKALLNPSI 200
>Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical
protein R09H10.4 protein.
Length = 877
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 87 HFKYGSCDVTPLFKTLT 37
HFKY S VTPL +LT
Sbjct: 229 HFKYDSTHVTPLAMSLT 245
>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily assigned
gene nameprotein 177 protein.
Length = 1667
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 16 YFYFNNLCQCFKKRGNVTGSIFKMKVLLLCIAFADVSLAMPVAEEK 153
+FY N L + + N++ +I M++L CI + +L V ++K
Sbjct: 956 FFYQNVLTKMLGESKNISEAISLMRLLQPCIVLKNENLMNEVTKKK 1001
>AF047657-6|AAK18946.1| 337|Caenorhabditis elegans Serpentine
receptor, class h protein243 protein.
Length = 337
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 97 LLCIAFADVSLAMPV 141
LLCIAFA + LA+P+
Sbjct: 196 LLCIAFASLFLAVPI 210
>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
protein C53B4.4e protein.
Length = 1544
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 157 RPFPPPLASPNSHPRRL 107
RPF PP SP SH +L
Sbjct: 1204 RPFSPPALSPASHDWKL 1220
>Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical
protein C53B4.4d protein.
Length = 1301
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 157 RPFPPPLASPNSHPRRL 107
RPF PP SP SH +L
Sbjct: 924 RPFSPPALSPASHDWKL 940
>Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical
protein C53B4.4c protein.
Length = 1304
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 157 RPFPPPLASPNSHPRRL 107
RPF PP SP SH +L
Sbjct: 924 RPFSPPALSPASHDWKL 940
>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical protein
C53B4.4b protein.
Length = 1586
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 157 RPFPPPLASPNSHPRRL 107
RPF PP SP SH +L
Sbjct: 1206 RPFSPPALSPASHDWKL 1222
>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical protein
C53B4.4a protein.
Length = 1584
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 157 RPFPPPLASPNSHPRRL 107
RPF PP SP SH +L
Sbjct: 1204 RPFSPPALSPASHDWKL 1220
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 93 DLHFKYGSCDVTPLFKTLTQIVKVEIL 13
++ FKY D+T +F+ + +V VEI+
Sbjct: 106 NIPFKYREPDLTAMFEKVGPVVDVEII 132
>Z19157-3|CAA79566.3| 395|Caenorhabditis elegans Hypothetical
protein ZC84.4 protein.
Length = 395
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +1
Query: 43 CFKKRGNVTGSIFKMKVLLLCIAFADVSLAM-PVAEEKDVCSRSTNSRSRAQ 195
C K + K ++ CIAFA V + + PV V + N S AQ
Sbjct: 133 CLDKTRGEKAATLKYAIIQFCIAFAFVMILLWPVFAYSQVFTFYMNPNSTAQ 184
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 154 PFPPPLASPNSHPRRLCTIVRP 89
P PPP NSH RR RP
Sbjct: 190 PIPPPPPRLNSHDRRALRARRP 211
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 93 DLHFKYGSCDVTPLFKTLTQIVKVEIL 13
++ FKY D+T +F+ + +V VEI+
Sbjct: 106 NIPFKYREPDLTAMFEKVGPVVDVEII 132
>U97008-2|AAB52309.1| 336|Caenorhabditis elegans Serpentine
receptor, class h protein244 protein.
Length = 336
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 91 VLLLCIAFADVSLAMPV 141
V LLCIAFA + LA+P+
Sbjct: 194 VPLLCIAFAILFLAVPI 210
>U64847-7|AAB04876.1| 718|Caenorhabditis elegans
Acyltransferase-like protein 6,isoform a protein.
Length = 718
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 163 NIRPFPPPLASPNSHPRRLCTIVRPSF*IWIL*RYP 56
N P P+ P+ PRR R S+ I ++ YP
Sbjct: 42 NFNGIPYPVVDPSRKPRRFLADFRYSWSIPLIHHYP 77
>AF039038-3|AAK21432.1| 145|Caenorhabditis elegans Hypothetical
protein K06A5.3 protein.
Length = 145
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 116 RM*VWRCQWRRKRTYVPAQPI 178
RM WRC R K+ VP Q I
Sbjct: 99 RMSAWRCWERAKKQAVPTQCI 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,196,416
Number of Sequences: 27780
Number of extensions: 93990
Number of successful extensions: 246
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,740,198
effective HSP length: 56
effective length of database: 11,184,518
effective search space used: 223690360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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