Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0896
         (230 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61960.1 68416.m06959 protein kinase family protein contains ...    26   2.9  
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f...    26   3.9  
At1g11700.1 68414.m01343 expressed protein contains Pfam profile...    26   3.9  
At5g41960.1 68418.m05109 expressed protein                             25   5.1  
At1g69560.1 68414.m07999 myb family transcription factor (MYB105...    25   5.1  
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar...    25   6.7  
At1g08420.1 68414.m00931 kelch repeat-containing protein / serin...    25   6.7  
At1g06590.1 68414.m00698 expressed protein                             25   6.7  
At4g03080.1 68417.m00416 kelch repeat-containing serine/threonin...    25   8.9  
At3g57950.1 68416.m06459 expressed protein hypothetical protein ...    25   8.9  
At3g01290.1 68416.m00037 band 7 family protein similar to hypers...    25   8.9  
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro...    25   8.9  
At1g58150.1 68414.m06595 hypothetical protein                          25   8.9  

>At3g61960.1 68416.m06959 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 626

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 206 SHQFWARLLELVEREHTSFSSATGIAKLTSAKAMHNSKTF 87
           +H F     ++ + EH+ FS+ TG + L SA+   ++  F
Sbjct: 264 NHMFLREPRQIPDVEHSGFSTCTGKSLLPSAQPSTSTNRF 303


>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
           family protein similar to pVHL-interacting
           deubiquitinating enzyme 1 type II [Homo sapiens]
           GI:18698435; contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 974

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +2

Query: 125 VWRCQWRRK--RTYVPAQPILEVAPKIDDS-VKPTEV 226
           VW C WRRK   +++   P  E+   ID   VK T V
Sbjct: 224 VWNCVWRRKGLLSFIKKYPDAELRGAIDGQFVKVTGV 260


>At1g11700.1 68414.m01343 expressed protein contains Pfam profile
           PF04520: Protein of unknown function, DUF584
          Length = 201

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 99  IVHSLRGCEFGDASGGGKGRM 161
           IVH +RG   G   GGG GR+
Sbjct: 88  IVHQIRGGGEGGGGGGGGGRV 108


>At5g41960.1 68418.m05109 expressed protein 
          Length = 217

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 169 SGNIRPFPPPLASPNSHPRRLC 104
           S +  P P PLA P  +P++LC
Sbjct: 27  SSSSSPSPLPLAYPLQNPKKLC 48


>At1g69560.1 68414.m07999 myb family transcription factor (MYB105)
           contains Pfam profile: PF00249: Myb-like DNA-binding
           domain
          Length = 330

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 140 WRRKRTYVPAQPILEVAPKIDDSVKPTEVA 229
           +RR++T V  +P++   P I +   PT +A
Sbjct: 215 YRRRKTMVSLKPLINPNPHIFNDFDPTRLA 244


>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
           hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
           PF02854: MIF4G domain
          Length = 1186

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 191 ARLLELVEREHTSFSSATGIAKLTSAKAMHNSKTFILN 78
           A +L+L EREH S      I + +  K  + S + +++
Sbjct: 884 AAILQLEEREHASSGDKVSIERHSDTKPSNKSSSDVIS 921


>At1g08420.1 68414.m00931 kelch repeat-containing protein /
            serine/threonine phosphoesterase family protein contains
            Pfam profiles: PF00149 calcineurin-like phosphoesterase,
            PF01344 kelch motif
          Length = 1018

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 160  IRPFPPPLASPNSHPRR 110
            I P PP L+SP + P R
Sbjct: 966  IHPLPPALSSPETSPER 982


>At1g06590.1 68414.m00698 expressed protein
          Length = 916

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 175 WLSGNIRPFPPPLASPNSHPRRLCT 101
           WL    +P+ PP+ SP+S  R+  T
Sbjct: 538 WLKDLQKPWGPPVISPDSGSRKSST 562


>At4g03080.1 68417.m00416 kelch repeat-containing serine/threonine
           phosphoesterase family protein contains Pfam profiles:
           PF00149 calcineurin-like phosphoesterase, PF01344 kelch
           motif
          Length = 881

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 160 IRPFPPPLASPNSHP 116
           I P PPP+ SP + P
Sbjct: 830 IHPLPPPILSPENSP 844


>At3g57950.1 68416.m06459 expressed protein hypothetical protein
           T24P15.9 - Arabidopsis thaliana, PIR:T00927; expression
           supported by MPSS
          Length = 181

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 178 NWLSGNIRPFPPPLASPNSH 119
           NW S ++ P P P   P+S+
Sbjct: 87  NWCSSHVVPVPQPFPFPSSY 106


>At3g01290.1 68416.m00037 band 7 family protein similar to
           hypersensitive-induced response protein [Zea mays]
           GI:7716470; contains Pfam profile PF01145: SPFH domain /
           Band 7 family
          Length = 285

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 223 FGRFNRVINFGRDF*NWLSGN 161
           FG+F +V+N G  F  W+ G+
Sbjct: 21  FGKFQKVLNPGLQFVPWVIGD 41


>At1g70140.1 68414.m08071 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 760

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 163 NIRPFPPPLASPNSHP 116
           ++ P PPPL  P+S+P
Sbjct: 45  SLSPVPPPLLPPSSNP 60


>At1g58150.1 68414.m06595 hypothetical protein
          Length = 91

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 105 HSLRGCEFGDASGGGKGRMF 164
           H+   C  G   GGG GR+F
Sbjct: 47  HAAWSCHSGGGGGGGGGRVF 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,896,548
Number of Sequences: 28952
Number of extensions: 89370
Number of successful extensions: 336
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,070,560
effective HSP length: 56
effective length of database: 10,449,248
effective search space used: 208984960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)