Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0895
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 28 1.0
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 28 1.0
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 27 1.8
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos... 27 3.2
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 26 5.6
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 5.6
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S... 25 7.4
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce... 25 7.4
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 9.7
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 25 9.7
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 28.3 bits (60), Expect = 1.0
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = +2
Query: 17 NAKEFD---SVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNE-LP-KKIK 154
+ ++FD +++ P A +KAERKTKRP + NE +P KK+K
Sbjct: 88 SVEQFDFLQDIVEKVPDAPPIKAERKTKRPRARRAANEGEHNESVPAKKVK 138
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 28.3 bits (60), Expect = 1.0
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 340 ERSSRIRYWAVCGRPFSSLASQLVACSLFQIRQ--LRVEFSSGLFPFHELDKF 188
E +R W + R + + S+L C+ F L V FSSGLF +EL F
Sbjct: 235 ENKTRTHIWLIKERHYFNQNSKL-RCAAFHPTSNLLVVGFSSGLFGIYELPSF 286
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 226 KILPAVVVSEKVNTPRAVMQETKKAFRKLPN 318
K+LPA++VS K+ + + K+ KLPN
Sbjct: 339 KLLPAIIVSPKLTLRNRSIIQIKEGESKLPN 369
>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 20 AKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIHEE 190
A+E V +L+ + ER+ K+ + +LD WY +P +S +D EE
Sbjct: 113 ARELPGVKELFEADMSFIPERQRKQEMQKRRLDAWYFGYIPPAQESLLEDFEAKIEE 169
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 529 EEQNGCGKKWFPHMVELALWTHNIVSDLQPQLLGKEPNN 645
+ + G + W ++ L LW + VSD + ++L EP N
Sbjct: 681 QNETGLHRPWCLYVSTLILWAYGYVSDGRCEML--EPGN 717
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 640 WALSLITVVVSPIQCCASR 584
W L+ + V VSPI C SR
Sbjct: 921 WRLAAVLVAVSPILCLTSR 939
>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +2
Query: 134 ELPKKIKSRGKDAHMIHEELVQLMK--WKQARGKFYP-QLSYLK 256
++PKK ++ + +HEE ++ ++ W + + F P ++S LK
Sbjct: 299 DVPKKSHPTNQEIYEVHEEYIRRLEGLWNKYKDVFLPNRISELK 342
>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 520
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 562 PHMVELALWTHNIVSDLQPQ 621
PH +L LW +N+V + P+
Sbjct: 436 PHAGDLGLWFYNVVDGILPE 455
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 71 KAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIHEELVQ 199
+ ER + P E N N L SRG+ AH+ EE V+
Sbjct: 361 RRERTSSTPSEQSTSVNETANSLSNLHLSRGEIAHLRQEEYVR 403
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 25.0 bits (52), Expect = 9.7
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = -1
Query: 382 TLMLWPF--PRL*DCLERSSRI-RYWAVCGRPFSSLASQLVACSLFQIRQLRVEFSSGLF 212
T+ LW P L SS + + G F+S++ + SL+ I+
Sbjct: 135 TIRLWDLRSPNCQGLLNVSSPVVAAFDATGLIFASVSERKYKISLYNIKSFDAR------ 188
Query: 211 PFHELDKFFVD-HVRIFTPRFDLLGKFILI 125
PF ++ F+ HVRI F GK++L+
Sbjct: 189 PFQDIPLTFLPPHVRIANVEFSTDGKYLLL 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,804
Number of Sequences: 5004
Number of extensions: 64265
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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