SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0895
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    28   1.0  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    28   1.0  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    27   1.8  
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos...    27   3.2  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.6  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   5.6  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    25   7.4  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    25   7.4  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   9.7  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    25   9.7  

>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
 Frame = +2

Query: 17  NAKEFD---SVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNE-LP-KKIK 154
           + ++FD    +++  P A  +KAERKTKRP      +    NE +P KK+K
Sbjct: 88  SVEQFDFLQDIVEKVPDAPPIKAERKTKRPRARRAANEGEHNESVPAKKVK 138


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 340 ERSSRIRYWAVCGRPFSSLASQLVACSLFQIRQ--LRVEFSSGLFPFHELDKF 188
           E  +R   W +  R + +  S+L  C+ F      L V FSSGLF  +EL  F
Sbjct: 235 ENKTRTHIWLIKERHYFNQNSKL-RCAAFHPTSNLLVVGFSSGLFGIYELPSF 286


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 226 KILPAVVVSEKVNTPRAVMQETKKAFRKLPN 318
           K+LPA++VS K+      + + K+   KLPN
Sbjct: 339 KLLPAIIVSPKLTLRNRSIIQIKEGESKLPN 369


>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 20  AKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIHEE 190
           A+E   V +L+   +    ER+ K+  +  +LD WY   +P   +S  +D     EE
Sbjct: 113 ARELPGVKELFEADMSFIPERQRKQEMQKRRLDAWYFGYIPPAQESLLEDFEAKIEE 169


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 529 EEQNGCGKKWFPHMVELALWTHNIVSDLQPQLLGKEPNN 645
           + + G  + W  ++  L LW +  VSD + ++L  EP N
Sbjct: 681 QNETGLHRPWCLYVSTLILWAYGYVSDGRCEML--EPGN 717


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 640 WALSLITVVVSPIQCCASR 584
           W L+ + V VSPI C  SR
Sbjct: 921 WRLAAVLVAVSPILCLTSR 939


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 134 ELPKKIKSRGKDAHMIHEELVQLMK--WKQARGKFYP-QLSYLK 256
           ++PKK     ++ + +HEE ++ ++  W + +  F P ++S LK
Sbjct: 299 DVPKKSHPTNQEIYEVHEEYIRRLEGLWNKYKDVFLPNRISELK 342


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 562 PHMVELALWTHNIVSDLQPQ 621
           PH  +L LW +N+V  + P+
Sbjct: 436 PHAGDLGLWFYNVVDGILPE 455


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 71  KAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIHEELVQ 199
           + ER +  P E     N   N L     SRG+ AH+  EE V+
Sbjct: 361 RRERTSSTPSEQSTSVNETANSLSNLHLSRGEIAHLRQEEYVR 403


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
 Frame = -1

Query: 382 TLMLWPF--PRL*DCLERSSRI-RYWAVCGRPFSSLASQLVACSLFQIRQLRVEFSSGLF 212
           T+ LW    P     L  SS +   +   G  F+S++ +    SL+ I+           
Sbjct: 135 TIRLWDLRSPNCQGLLNVSSPVVAAFDATGLIFASVSERKYKISLYNIKSFDAR------ 188

Query: 211 PFHELDKFFVD-HVRIFTPRFDLLGKFILI 125
           PF ++   F+  HVRI    F   GK++L+
Sbjct: 189 PFQDIPLTFLPPHVRIANVEFSTDGKYLLL 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,804
Number of Sequences: 5004
Number of extensions: 64265
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -