Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0895
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0995 - 29545058-29545204,29545988-29546074,29546166-295463...    54   8e-08
12_01_1001 - 10145663-10147006                                         29   2.5  
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722     28   5.8  
12_02_0683 + 22006770-22006935,22007030-22007274,22007524-220077...    28   7.6  
06_02_0365 + 15190841-15190988,15191296-15191754,15192692-151927...    28   7.6  
01_01_1202 - 9681836-9683146                                           28   7.6  

>03_05_0995 -
           29545058-29545204,29545988-29546074,29546166-29546361,
           29546686-29546915
          Length = 219

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
 Frame = +1

Query: 295 KAFRKLPNIESAMTALSNLKGVGXXXXXXXXXXXXPEIAPFMADECVQAIPEMEGSDYTA 474
           KAF  LP++  A+T L+ LKGVG            P++APFM+DE + A       +YT 
Sbjct: 98  KAFAALPDLRKAITELTVLKGVGPATASAVLAAYAPDVAPFMSDEAMVAALG-NAKEYTL 156

Query: 475 REYLNFVSHIPNVCDRLNEEQNGCGKKWFPHM-VELALWTHNIVSDLQPQLLGKEPNNPS 651
           ++YL F   +      L+      G++ F    VE ALW+  + S       G +  N S
Sbjct: 157 KQYLAFAEKLQTKSKELSS-----GEEVFTTSDVERALWSSAVASKSLKAPPGNDLENKS 211



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 27/80 (33%), Positives = 49/80 (61%)
 Frame = +2

Query: 5   FLEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIH 184
           F   +A E+ + L  Y +  +L A  K   PD L+++D++Y+ +LP  ++ R  +  +  
Sbjct: 7   FASGDAAEWRAALAAYDR--RLAALGK---PD-LVEVDSFYRRDLPDLLRRRDPEPFLAK 60

Query: 185 EELVQLMKWKQARGKFYPQL 244
            ELV+L++WK +RGK+ P+L
Sbjct: 61  PELVRLLQWKLSRGKWRPRL 80


>12_01_1001 - 10145663-10147006
          Length = 447

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 661 FASRTGCWALSLITVVV-SPIQC 596
           F+S TGCWA+S  TV V + I C
Sbjct: 210 FSSNTGCWAMSSTTVYVDTKINC 232


>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
          Length = 740

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = +3

Query: 213 NRPEENSTRSCRI*KSEH----ATSCDARDEKGLPQTAQYRIRDDRSKQSQRRGNGHSIS 380
           N PEEN+ + C++ + +H    ATS     + G PQ  +  +  D+S      G+G++I 
Sbjct: 383 NAPEENAIKHCKVTECDHDFGEATSTVVSVDSG-PQIRKDEL-VDKSFTEIIEGSGNNIE 440

Query: 381 VISCR*SRN 407
            +S    RN
Sbjct: 441 KLSSSLQRN 449


>12_02_0683 +
           22006770-22006935,22007030-22007274,22007524-22007727,
           22007847-22007939,22008015-22008107,22008196-22008537,
           22008675-22008737,22008812-22008892
          Length = 428

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 291 EKGLPQTAQYRIRDDRSKQSQRRGNGHSISVISCR 395
           E+G+ +T + R+R  R  Q     N  +IS++ CR
Sbjct: 393 EEGVVRTNRKRVRCSRPDQDDSMSNQRNISMVFCR 427


>06_02_0365 +
           15190841-15190988,15191296-15191754,15192692-15192782,
           15192902-15193003,15193126-15193228,15193548-15193685,
           15193912-15193974,15195042-15195124,15196312-15196411,
           15196640-15196717,15196834-15196941,15197987-15198067,
           15200179-15200220,15200221-15200283,15200426-15200482
          Length = 571

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 318 IGQFAEGLFRLLHHSSWRVHFFRYDN 241
           IG  A+G+ +  HH  W    F+YD+
Sbjct: 195 IGTMAKGVGKRGHHKYWGTRMFKYDD 220


>01_01_1202 - 9681836-9683146
          Length = 436

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = -1

Query: 640 WALSLITVVVSPIQCCASRGPALPCVETISCRSRFVPRLTYHRRSVCG 497
           W + +   +   +   A RGP    VE  S R   +P L Y  R   G
Sbjct: 167 WVMLIALALYDLVAVLAPRGPLRMLVELASSRDDELPALVYESRPTVG 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,844,889
Number of Sequences: 37544
Number of extensions: 440902
Number of successful extensions: 1015
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)