Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0895
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38771| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   6e-13
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)               29   2.6  
SB_24373| Best HMM Match : Skb1 (HMM E-Value=1.6e-05)                  28   5.9  
SB_49350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_46750| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)              28   7.8  

>SB_38771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
 Frame = +2

Query: 8   LEANAKEFDSVLKLYPQAIKLKAERKTK-RPDELIKLDNWYQNELPKKIKSRGKDAHMIH 184
           L+A+A  +  VL LY   +K  A+ K K + ++L++LDNW+Q ELP  I SR ++ ++  
Sbjct: 5   LDASAVRWHEVLDLYGVVVKEMAKGKKKDKAEQLLELDNWFQQELPVSISSR-EEKYLTK 63

Query: 185 EELVQLMKWKQARGKFYPQLSYLKK 259
           +EL +LM WK +RGKF P+L  L K
Sbjct: 64  DELTKLMTWKLSRGKFRPRLVDLIK 88



 Score = 35.1 bits (77), Expect = 0.051
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +1

Query: 226 KILPAVVVSEKVNTPRAVMQETKKAFRKLPNIESAMTALSNLKGVG 363
           K  P +V   K N+   +   TKKAF+ LP++  A+  LS L GVG
Sbjct: 78  KFRPRLVDLIKSNSDDKIDTLTKKAFKLLPDVIQAIKVLSELNGVG 123



 Score = 34.3 bits (75), Expect = 0.090
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 553 KWFPHMVELALWTHNIVSDLQPQLL 627
           KW  H VELALWT+ + S   P LL
Sbjct: 133 KWDEHKVELALWTYTVASKHAPHLL 157


>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
          Length = 865

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 210 GNRPEENSTRSCRI*KSEHATSCDARDEKGLPQTAQYRIRDDRSKQSQRRGNGH 371
           G   E  S++     K EH +   +RD+K  P++   R R  R  +SQ RG  +
Sbjct: 137 GRWSERRSSKDRESRKREHRSRSKSRDKKPKPESPS-RGRSSRRSRSQERGTSN 189


>SB_24373| Best HMM Match : Skb1 (HMM E-Value=1.6e-05)
          Length = 494

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 59  AIKLKAERKTKRPDELIKLDNWYQ 130
           ++K K ER   R D+LIKL  WY+
Sbjct: 426 SLKRKLERVRDREDKLIKLKLWYE 449


>SB_49350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 998

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 438 GDPRNGRQRLHSKGIPQFRKPHTERL**VKRGTKRLRQEMV 560
           GD  +G++ LH   +  ++K H E +     GT+R R++ V
Sbjct: 271 GDTPDGKRNLHGTAMAIYQKTHPEDVTPELSGTRRCRKDDV 311


>SB_46750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +2

Query: 65  KLKAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIHEELVQLMKWKQARGKFYPQL 244
           K + ++    PD  + LD     E+  KI   G D+H  H +++ L     A G     L
Sbjct: 19  KKRTQQVRTNPDGTLDLD-----EIKSKIHD-GSDSHYTHTKVICLESSHNATGGTVLSL 72

Query: 245 SYLKK 259
            Y+KK
Sbjct: 73  EYMKK 77


>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
          Length = 1487

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 280  SQLVACSLFQIRQ-LRVEFSSGLFPFHELDKF 188
            +++ +C+L +  Q L V FS+G+F  HEL  F
Sbjct: 1167 TEITSCALHKATQVLIVGFSNGVFTIHELPDF 1198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,608,554
Number of Sequences: 59808
Number of extensions: 508587
Number of successful extensions: 1260
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)