Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0895
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical pr...    32   0.42 
U40946-4|AAA81726.1|  414|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF100307-5|AAC68933.2|  316|Caenorhabditis elegans Hypothetical ...    29   2.2  
U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical p...    29   2.9  
AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH...    29   2.9  
Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    28   6.8  

>Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical
           protein K10G9.2 protein.
          Length = 240

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 656 KPDGLLGSFPNNCGCKSDTMLCVQRASSTMCGNHFLPQPFCSSFNL 519
           +PD +  S  N C C S+ ++ +Q +S+ M  +   P P C+S +L
Sbjct: 47  RPDEISASTMNACSCSSE-IVGIQTSSTVMADSTRPPPPLCASSSL 91


>U40946-4|AAA81726.1|  414|Caenorhabditis elegans Hypothetical
           protein W05H9.1 protein.
          Length = 414

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +2

Query: 68  LKAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIHEELVQLMKWKQARGKFYPQLS 247
           +K +++ K  ++  K+D++ +     KIK + ++     +E  Q+ KWKQA  K   Q  
Sbjct: 119 VKEKKQAKEQEKQQKIDDFVKT-FTDKIKQKQEEKEAQRQE--QIEKWKQASEKLQQQRE 175

Query: 248 YLKK 259
            LK+
Sbjct: 176 ELKQ 179


>AF100307-5|AAC68933.2|  316|Caenorhabditis elegans Hypothetical
           protein T12B5.8 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 98  DELIKLDNWYQNELPKKIKSRGKDAHMIHEELVQLMKWKQA 220
           DE++ + +W+ ++  K I+ R  D+    E + QL +WK A
Sbjct: 163 DEVLTILSWFDSKELKTIELRWMDSIDRFERITQLEQWKNA 203


>U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical
           protein R151.6 protein.
          Length = 237

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -1

Query: 178 HVRIFTPRFDLLGKFILIPIVQFYELIWSFCFTFSF*FNRLRIQL*YTIEFFCICLQK 5
           H+   TP        ++I   QF+ LI SFCF  SF F+ L   + +T   +C+ L++
Sbjct: 30  HLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFL-FNMIFTYR-YCMMLEE 85


>AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH
           oxidoreductase complexI subunit protein.
          Length = 237

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -1

Query: 178 HVRIFTPRFDLLGKFILIPIVQFYELIWSFCFTFSF*FNRLRIQL*YTIEFFCICLQK 5
           H+   TP        ++I   QF+ LI SFCF  SF F+ L   + +T   +C+ L++
Sbjct: 30  HLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFL-FNMIFTYR-YCMMLEE 85


>Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical
           protein C04F12.4 protein.
          Length = 135

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = +2

Query: 41  LKLYPQAIKLKAERKTKRP----DELIKLDNWYQNELPKKIKSRGKDAHMIHEELVQLMK 208
           L+L    +KL+  ++TK      D     +N+ + +  KKI  R   A +   E  +LMK
Sbjct: 55  LQLTKFVLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMK 114

Query: 209 WKQARGKFY-PQLSYLKK 259
            KQ R +    +L+ LKK
Sbjct: 115 AKQMRNRIVRVELAKLKK 132


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 265 TPRAVMQETKKAFRKLPNIESAMTALSNLKG 357
           TP   +   +  FRK PN+E  MTA  + KG
Sbjct: 776 TPAGNVGMKRTVFRKDPNVEGIMTASGSRKG 806


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,614,888
Number of Sequences: 27780
Number of extensions: 369935
Number of successful extensions: 962
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)