Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0895
(664 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12210.2 68416.m01524 expressed protein 61 6e-10
At3g12210.1 68416.m01523 expressed protein 48 7e-06
At1g61980.1 68414.m06991 mitochondrial transcription termination... 32 0.30
At5g26020.1 68418.m03096 hypothetical protein 30 1.2
At3g56100.1 68416.m06235 leucine-rich repeat transmembrane prote... 30 1.2
At1g61960.1 68414.m06989 mitochondrial transcription termination... 30 1.6
At3g31950.1 68416.m04046 hypothetical protein 29 2.8
At1g62110.1 68414.m07008 mitochondrial transcription termination... 29 3.6
At1g12220.1 68414.m01414 disease resistance protein RPS5 (CC-NBS... 28 6.4
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|... 27 8.4
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|... 27 8.4
At1g62085.1 68414.m07006 mitochondrial transcription termination... 27 8.4
At1g61990.1 68414.m06992 mitochondrial transcription termination... 27 8.4
At1g61970.1 68414.m06990 mitochondrial transcription termination... 27 8.4
At1g10600.1 68414.m01200 mov34 family protein similar to AMSH [H... 27 8.4
>At3g12210.2 68416.m01524 expressed protein
Length = 209
Score = 61.3 bits (142), Expect = 6e-10
Identities = 36/115 (31%), Positives = 59/115 (51%)
Frame = +1
Query: 277 VMQETKKAFRKLPNIESAMTALSNLKGVGXXXXXXXXXXXXPEIAPFMADECVQAIPEME 456
V ++KAF+ LP+I A+ L+ LKGVG P+IAPFM+DE ++ +
Sbjct: 90 VKSASEKAFKSLPDISKAVKELTVLKGVGAATASAVLAAYAPDIAPFMSDEAME-VALGN 148
Query: 457 GSDYTAREYLNFVSHIPNVCDRLNEEQNGCGKKWFPHMVELALWTHNIVSDLQPQ 621
DY+ ++YL F + + + L + G P +E ALW+ + + QP+
Sbjct: 149 SKDYSLKQYLLFATKLQDKAKELKLKGEWDG----PSDIERALWSCTVRAKSQPE 199
Score = 47.6 bits (108), Expect = 7e-06
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = +2
Query: 101 ELIKLDNWYQNELPKKIKSRGKDAHMIHEELVQLMKWKQARGKFYPQL 244
EL+ LD +Y+ +LP + R + ++ EL QLMKWK +RGK+ P+L
Sbjct: 31 ELVSLDQFYRIKLPCLLHDRDPNPYLTTSELSQLMKWKLSRGKWRPRL 78
>At3g12210.1 68416.m01523 expressed protein
Length = 155
Score = 47.6 bits (108), Expect = 7e-06
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = +2
Query: 101 ELIKLDNWYQNELPKKIKSRGKDAHMIHEELVQLMKWKQARGKFYPQL 244
EL+ LD +Y+ +LP + R + ++ EL QLMKWK +RGK+ P+L
Sbjct: 31 ELVSLDQFYRIKLPCLLHDRDPNPYLTTSELSQLMKWKLSRGKWRPRL 78
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/51 (43%), Positives = 30/51 (58%)
Frame = +1
Query: 277 VMQETKKAFRKLPNIESAMTALSNLKGVGXXXXXXXXXXXXPEIAPFMADE 429
V ++KAF+ LP+I A+ L+ LKGVG P+IAPFM+DE
Sbjct: 90 VKSASEKAFKSLPDISKAVKELTVLKGVGAATASAVLAAYAPDIAPFMSDE 140
>At1g61980.1 68414.m06991 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 418
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 26 EFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 124
EF ++K +PQ I L AE K+ + L+K NW
Sbjct: 308 EFSVLIKRFPQGIGLSAEMVKKKTEFLVKKMNW 340
>At5g26020.1 68418.m03096 hypothetical protein
Length = 241
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 285 RDEKGLPQTAQYRIRDDRSKQSQRRGNGHSIS 380
RDE G P T + ++ + + ++QRRG G S
Sbjct: 106 RDETGTPMTQRKKVCEPEASKTQRRGKGDEAS 137
>At3g56100.1 68416.m06235 leucine-rich repeat transmembrane protein
kinase, putative hypothetical proteins - Arabidopsis
thaliana
Length = 719
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 59 AIKLKAER--KTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIHEELVQLMKWKQARGKF 232
A+K ER K K+ ++L+ D + L + +RG D H+ + L+K ARG F
Sbjct: 477 AVKRLRERSPKVKKREKLVVFDYMSRGSLATFLHARGPDVHINWPTRMSLIK-GMARGLF 535
Query: 233 Y 235
Y
Sbjct: 536 Y 536
>At1g61960.1 68414.m06989 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 457
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 26 EFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 124
EF ++K YPQ I AE K+ + ++K NW
Sbjct: 344 EFAMMVKRYPQCIDYTAETVKKKTEFIVKNMNW 376
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 541 GCGKKWFPHMVELALWTHNIVSDLQPQLLGKE 636
G G+K FP++V+ AL N V DL+ G+E
Sbjct: 448 GSGRKAFPNLVKFALGRGNSVRDLRIIACGRE 479
>At1g62110.1 68414.m07008 mitochondrial transcription termination
factor family protein / mTERF family protein contains
Pfam profile PF02536: mTERF
Length = 462
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 26 EFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 124
EF +++K +PQ + L AE K+ + ++K NW
Sbjct: 345 EFITMVKRFPQCLILSAETVKKKIEFVVKKMNW 377
>At1g12220.1 68414.m01414 disease resistance protein RPS5
(CC-NBS-LRR class) / resistance to Pseudomonas syringae
protein 5 (CC-NBS-LRR class) domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
Identical to RPS5 (resistance to Pseudomonas syringae
protein 5)(gi:3309620)
Length = 889
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +1
Query: 442 IPEMEGSDYTAREYLNFVSHIPNVCDRLNEEQNGCGKKWFPHMVELALWTHNIVSDLQPQ 621
I E EG + + + + C L EE+N K + E+ALW I SDL Q
Sbjct: 439 INEKEGRERNINQGYEIIGTLVRACLLLEEERNKSNVKMHDVVREMALW---ISSDLGKQ 495
>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 435
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +1
Query: 196 PAHEMETGQRKILPAVVVSEKVNTPRAVMQETKKAFRKLPN--IESAMTALS 345
P T R P+ +SE N+P A+ + RK PN A T LS
Sbjct: 26 PPSSSTTTTRATSPSSTISESSNSPLAISTRKPRTQRKRPNQTYNEAATLLS 77
>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 424
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +1
Query: 196 PAHEMETGQRKILPAVVVSEKVNTPRAVMQETKKAFRKLPN--IESAMTALS 345
P T R P+ +SE N+P A+ + RK PN A T LS
Sbjct: 26 PPSSSTTTTRATSPSSTISESSNSPLAISTRKPRTQRKRPNQTYNEAATLLS 77
>At1g62085.1 68414.m07006 mitochondrial transcription termination
factor family protein / mTERF family protein contains
Pfam profile PF02536: mTERF
Length = 461
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 26 EFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 124
E + K +PQ + L AE K+ + L+K NW
Sbjct: 348 EVAMIAKRFPQCLILSAETVKKKTEFLVKKMNW 380
>At1g61990.1 68414.m06992 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 414
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 26 EFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNEL 139
EF ++K YP I+ E K+ + L+K W +N L
Sbjct: 301 EFLMMVKRYPPCIEYSVESVKKKNEFLVKKMKWPRNAL 338
>At1g61970.1 68414.m06990 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 418
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 26 EFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 124
EF ++K +P I L E K+ + L+K NW
Sbjct: 308 EFAKMVKHFPPCIGLSTETVKKKTEFLVKKMNW 340
>At1g10600.1 68414.m01200 mov34 family protein similar to AMSH [Homo
sapiens] GI:4098124; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 271
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 592 ASRGPALPCVETISCRSRFVPRL 524
+S P+L CVE ++C+S V R+
Sbjct: 5 SSPSPSLSCVENVTCKSSHVSRV 27
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,787,843
Number of Sequences: 28952
Number of extensions: 349276
Number of successful extensions: 891
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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