Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0894
         (638 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RIY4 Cluster: Zinc finger C-x8-C-x5-C-x3-H type, puta...    34   2.5  
UniRef50_UPI0000499369 Cluster: hypothetical protein 276.t00012;...    34   3.3  
UniRef50_A0D8A8 Cluster: Chromosome undetermined scaffold_40, wh...    33   4.4  
UniRef50_Q24702 Cluster: DVA-1 polyprotein precursor (Antigen 1)...    33   4.4  

>UniRef50_Q7RIY4 Cluster: Zinc finger C-x8-C-x5-C-x3-H type,
           putative; n=3; Plasmodium (Vinckeia)|Rep: Zinc finger
           C-x8-C-x5-C-x3-H type, putative - Plasmodium yoelii
           yoelii
          Length = 959

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 23/75 (30%), Positives = 38/75 (50%)
 Frame = +2

Query: 395 GLIKEMLEKVSEVNLHSDECVENAPDELKDSPRTFEATHVLKTQKHRLKRRRKTKEKNVM 574
           GLI+++ EKV  V    DE +EN  + +    +  E T     +K + K + KTKEK   
Sbjct: 496 GLIRDINEKVEIVENPFDENIENIENIINTCQKETEKT----KEKAKEKAKEKTKEKTKE 551

Query: 575 *PLNQYLKWENQENA 619
              N+++ +E  + A
Sbjct: 552 SYYNEHISYEQCKGA 566


>UniRef50_UPI0000499369 Cluster: hypothetical protein 276.t00012;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 276.t00012 - Entamoeba histolytica HM-1:IMSS
          Length = 192

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
 Frame = +2

Query: 392 FGLIK---EMLEKVSEVNLHSDECVENAPDELKDSPRTFEATHVLKTQKHRLKRR---RK 553
           FG +K   EML K + + LH +  +E   + ++++ R  EA  +LK +  R KRR    K
Sbjct: 27  FGNLKSETEMLVKDARIILHKERVIEEGREVIEETKRNEEAEEILKKEIVRDKRREIIEK 86

Query: 554 TKEKNVM*PLNQYLKWENQENALLK 628
            +E   M    + LK E Q    L+
Sbjct: 87  DEELQRMEKEIEELKAEGQRAKKLR 111


>UniRef50_A0D8A8 Cluster: Chromosome undetermined scaffold_40, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_40, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2015

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 249  TNHEELHAYWSTWTFFTKFTVGTLIKIYVSCGIISLHC 136
            T H+E  A+ ST T  TK+   T  +I   C I+S++C
Sbjct: 1278 TTHDECQAFDSTCTLQTKYNSDTSTQINSGCQILSINC 1315


>UniRef50_Q24702 Cluster: DVA-1 polyprotein precursor (Antigen 1)
            (Allergen 1) (Nematode polyprotein allergen DVA-1) (NPA
            DVA-1) [Contains: DVA-1 unit A; DVA-1 unit B; DVA-1 unit
            C; DVA-1 unit D; DVA-1 unit E; DVA-1 unit F; DVA-1 unit
            G; DVA-1 unit H; DVA-1 unit I; DVA-1 unit J; DVA-1 unit
            K; DVA-1 unit L; C-terminal extension peptide]; n=2;
            Trichostrongyloidea|Rep: DVA-1 polyprotein precursor
            (Antigen 1) (Allergen 1) (Nematode polyprotein allergen
            DVA-1) (NPA DVA-1) [Contains: DVA-1 unit A; DVA-1 unit B;
            DVA-1 unit C; DVA-1 unit D; DVA-1 unit E; DVA-1 unit F;
            DVA-1 unit G; DVA-1 unit H; DVA-1 unit I; DVA-1 unit J;
            DVA-1 unit K; DVA-1 unit L; C-terminal extension peptide]
            - Dictyocaulus viviparus (Bovine lungworm)
          Length = 1557

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
 Frame = +2

Query: 353  RHYGDGDVISTPDFGLIKEMLEKVSE---VNLHSDECVENAPDELKDSPRTFEATHVLKT 523
            RHY   D I   +  +IKEM E  +    +    DE +    DE K +     A+   K 
Sbjct: 1346 RHYIK-DFIGKDNLAVIKEMKESGATNEAIGEKIDEFIAGLDDEQKKAQAQRAASACKKI 1404

Query: 524  QKHRLKRRRKTKEKNVM*PLNQYLKWENQE 613
               + ++RR+  E +V   +++YL W N+E
Sbjct: 1405 YGVKSRKRREHYEIDVDEAISKYLTWLNEE 1434


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,185,037
Number of Sequences: 1657284
Number of extensions: 11030202
Number of successful extensions: 25376
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25366
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)