Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0894
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    29   0.57 
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    27   1.7  
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    27   1.7  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    27   3.0  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    27   3.0  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    26   5.3  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   5.3  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   5.3  
SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual       25   7.0  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   9.2  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.2  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 431 VNLHSDECVENAPDELKDSPRTFEATHVLKTQK--HRLKRRRKTKEKNVM*PLNQY 592
           VN  + EC + A DEL D     +  +V + QK   R +  RK  E+  +  +N+Y
Sbjct: 306 VNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKY 361


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 176 LKSMFHAVLSVFIVVKNTFYSTKYPIIYCSLQ 81
           L S+F A +SV IVV   F  T+Y ++   LQ
Sbjct: 353 LFSIFMASMSVIIVVSEVFLHTQYSLVGIILQ 384


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +2

Query: 398 LIKEMLEKVSEVNLHSDECVENAPDELKDSPRTFEATHVLKTQKHRLKRRRKTK 559
           ++K    K +++N HS+  V +  + L ++  TF+    ++TQ  +  + R  K
Sbjct: 105 VVKGNRNKPAQMNQHSENVVVSLQNSLANTSMTFKDILEIRTQNMKASQNRTEK 158


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 467 PDELKDSPRTFEATHVLKTQKHRLKRRRKTKEKNVM*PL 583
           P +LK+SP   +ATH        ++  +K    NV  PL
Sbjct: 85  PQQLKNSPAKAKATHTSSGVTKEVRASKKYTSSNVEFPL 123


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -1

Query: 296 LRL*DLF-PPVPGLGFAQITKN-CMLTGPLGHFLQNLQLEH*LKSMFHAVLSVFIVVKNT 123
           LRL  LF   + GLG         +L  P  H  Q +  +  + ++F   LS+ ++V   
Sbjct: 271 LRLFYLFWQELDGLGIVLFVSGFTLLLLPFSHSSQVVSPDSTILTLFTITLSIALLVTLC 330

Query: 122 FYSTKY 105
           FY  KY
Sbjct: 331 FYDVKY 336


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 178  N*NLCFMRYYQSSLS*KIPSTALSTRLYIAVCNDMYKIYNY 56
            N NL F   ++     KIP T+LS  L   +    + IYNY
Sbjct: 987  NANLEFEAIWKGHSENKIPYTSLSNHLSTEIVKLDHDIYNY 1027


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = +2

Query: 401 IKEMLEKVSEVNLHSDECVENAPDELKDSPRTFEATHVLKTQKHRLKRRRKTKEK 565
           + + + +  + +L +D+C + A    + SP   EA  VL  ++HRL   RKTK++
Sbjct: 723 LTDFIIRKQKAHLSADQCKQLANVLTQASP---EAKTVL--EQHRLSEMRKTKKQ 772


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 585  FNGYITFFSFVFLLLFN--RCFCVFSTWVASKV 493
            F GY+ F  F  LLLF   R   + STW+  K+
Sbjct: 1494 FVGYVFFNIFAVLLLFYVFRVMKLRSTWLGKKI 1526


>SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 198

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 509 HVLKTQKHRLKRRRKTKEKNVM*PLNQYLKWENQENALLKFES 637
           +V K +KHR++          + PLN  L+ E  +   L++ES
Sbjct: 84  NVSKEEKHRMESEAMVSITQQLIPLNLSLQAEEIKELFLEYES 126


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 487 TVFQFIRCIFNTFIRV 440
           +VF+FI CIF  FIR+
Sbjct: 840 SVFRFIGCIFYLFIRL 855


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 410 MLEKVSEVNLHSDECVE--NAPDELKDSPRTFEATHVLKTQKHRLK 541
           ++    EV  H D  +E  +APD     PR    +HV  T K +L+
Sbjct: 274 LINNKKEVRRHFDIVMEFSDAPDTKWIFPRESVLSHVFNTDKKKLE 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,130
Number of Sequences: 5004
Number of extensions: 49321
Number of successful extensions: 129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)