Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0894
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 31 0.77
05_03_0147 - 8895516-8895623,8895751-8895756,8895987-8896118,889... 29 3.1
11_03_0177 + 11269754-11270320,11271701-11272180,11272663-112732... 28 5.4
04_04_0682 - 27229936-27231087,27231954-27232337 28 5.4
02_04_0488 + 23397480-23397687,23397777-23397805,23398462-233985... 28 7.2
02_04_0482 + 23291986-23292181,23292289-23292317,23293500-232936... 28 7.2
10_01_0030 - 386008-388056,388166-388360,388931-389062,389167-38... 27 9.5
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 446 DECVENAPDELKDSPRTFEATHVLKTQKHRLKRRRKTKEK 565
+ECV + + LK+ R E K ++ K RRK KEK
Sbjct: 726 EECVVHLKERLKEKERLREEEKARKEKEREEKERRKEKEK 765
>05_03_0147 -
8895516-8895623,8895751-8895756,8895987-8896118,
8896499-8896600,8896822-8896858,8896950-8897242,
8898293-8898418,8898590-8898726,8898818-8898889,
8898972-8899020,8899242-8899312,8899395-8899505,
8899602-8899929,8899999-8900172,8900519-8900578,
8900622-8900861,8900986-8901048,8901123-8901125
Length = 703
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = -3
Query: 564 FSFVFLLLFNRCFCV--FSTWVASKV 493
F F FLL+FN + F+TW+A+KV
Sbjct: 62 FEFDFLLMFNSSYVPIKFATWIANKV 87
>11_03_0177 +
11269754-11270320,11271701-11272180,11272663-11273292,
11273377-11273443,11273510-11273620,11273696-11275206
Length = 1121
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 428 EVNLHSDECVE-NAPDELKDSPRTFEATHVLKTQKHRL 538
+V+ ECV AP+EL +P T + H+ + +K+R+
Sbjct: 528 DVSRKRKECVSFQAPEELGVNPETLSSFHIQEMKKNRV 565
>04_04_0682 - 27229936-27231087,27231954-27232337
Length = 511
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 377 ISTPDFGLIKEMLEKVSEVNLHSDECVENAPDELKDSPRTF 499
+S+ D + +++ KV V+ H++E E PD LKD RT+
Sbjct: 142 LSSSDMAIQLDLIAKVRGVS-HAEEYFEELPDPLKDK-RTY 180
>02_04_0488 +
23397480-23397687,23397777-23397805,23398462-23398564,
23398811-23398982,23399380-23399440,23399757-23399889,
23400438-23400709,23400776-23400843,23401096-23401235,
23401413-23401499,23401580-23402088,23402173-23402990,
23403024-23403222,23403662-23403817
Length = 984
Score = 27.9 bits (59), Expect = 7.2
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Frame = -3
Query: 249 TNHEELHAYWSTWTFFTKF----TVGTLIKIYVS-CGIISLHCRKKYLLQH*VPDYILQ- 88
T+ EE AYW WT F + TV I I S G++ L ++K LL+ D L+
Sbjct: 302 TSDEE--AYWILWTLFNQSFMHKTVFEFIHIGSSVSGMLHLSVKEKVLLRAMFVDKFLRW 359
Query: 87 --FAMICTKSIITILFV*FLLKPQNMIKT 7
F + C + I+ + F L P + I+T
Sbjct: 360 KTFPLCCLRWILH--YAVFELPPNSGIET 386
>02_04_0482 +
23291986-23292181,23292289-23292317,23293500-23293602,
23293855-23293979,23294788-23294920,23295468-23295739,
23295806-23295873,23296126-23296265,23296443-23296529,
23296610-23297118,23297203-23298020,23298054-23298252,
23299084-23299228,23299260-23299314,23301184-23301310,
23301399-23301468,23301980-23302085,23302168-23302279,
23302775-23302897,23303000-23303159,23303283-23303359,
23303457-23303509,23303683-23303737,23304032-23304706
Length = 1478
Score = 27.9 bits (59), Expect = 7.2
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Frame = -3
Query: 249 TNHEELHAYWSTWTFFTKF----TVGTLIKIYVS-CGIISLHCRKKYLLQH*VPDYILQ- 88
T+ EE AYW WT F + TV I I S G++ L ++K LL+ D L+
Sbjct: 262 TSDEE--AYWILWTLFNQSFMHKTVFEFIHIGSSVSGMLHLSVKEKVLLRAMFVDKFLRW 319
Query: 87 --FAMICTKSIITILFV*FLLKPQNMIKT 7
F + C + I+ + F L P + I+T
Sbjct: 320 KTFPLCCLRWILH--YAVFELPPNSGIET 346
>10_01_0030 -
386008-388056,388166-388360,388931-389062,389167-389538,
389753-389894,392274-392533,392737-393015,394796-394939
Length = 1190
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 413 LEKVSEVNLHSDECVENAPDELKDSPRTFEATHVLKTQKHRLKRRRKTKEK 565
LEK +++ L +E + +E ++ RT E L+ +K RLK + K KEK
Sbjct: 505 LEKQTKL-LEEEEKEKREEEERRERRRTKEREKKLR-RKERLKEKEKEKEK 553
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,550,421
Number of Sequences: 37544
Number of extensions: 295456
Number of successful extensions: 638
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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