Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0894
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5624| Best HMM Match : LEA_4 (HMM E-Value=0.62)                     28   5.6  
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)              27   9.7  
SB_39604| Best HMM Match : Vac_Fusion (HMM E-Value=0.18)               27   9.7  

>SB_5624| Best HMM Match : LEA_4 (HMM E-Value=0.62)
          Length = 372

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 395 GLIKEMLEKVSEVNLHSDECVENAPDELKDSPRTFEATHVLKTQKHRLKRRRKTKE 562
           GL  + ++ + E    + E  EN     K++ + FE++  LKT K R +   K KE
Sbjct: 62  GLFGKFIQNIKEGIERNKEMQENIKKFQKEAKK-FESSETLKTAKSRFEFVEKVKE 116


>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
          Length = 1977

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -3

Query: 195  FTVGTLIKIYVSCGIISLHCR--KKYLLQH*VPDYILQFAMICTKSIITILFV 43
            +T+   I++Y+     S+HC+    Y L   +  YI+    I T S+ T+L++
Sbjct: 1602 YTLSVRIRLYIVSAYTSIHCQCVYGYTLSVRICLYIVSAYNIYTLSVRTLLYI 1654


>SB_39604| Best HMM Match : Vac_Fusion (HMM E-Value=0.18)
          Length = 208

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +2

Query: 452 CVENAPDELKDSPRTF----EATHVLKTQKHRLKRRRKTKEKN 568
           CVE A D+LK    TF    +A + LK  K +L + +  + K+
Sbjct: 72  CVELAEDQLKRYTETFMTLQKAAYSLKKMKQKLSKEKHRRSKD 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,224,893
Number of Sequences: 59808
Number of extensions: 344578
Number of successful extensions: 891
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)