Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0894
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    31   0.012
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   2.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.6  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 30.7 bits (66), Expect = 0.012
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = -2

Query: 214 LDIFYKIYSWNIN*NLCFMRYYQSSLS*KI---PSTALSTRLYIAVCNDMYKIY 62
           L +F++ Y W +  +LC +R Y S +S  +      A S   Y+A+C+ + ++Y
Sbjct: 98  LSLFWQQYPWVLGVSLCKIRAYVSEMSSYVSVLTIVAFSMERYLAICHPL-RVY 150


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -3

Query: 243 HEELHAYWSTWTFFTKFTVGTLIKIYVSCGIISLHCR 133
           H++ H   +       F+     K+YVS G + +H R
Sbjct: 1   HQQFHCAAAEGQAKKSFSCKYCEKVYVSLGALKMHIR 37


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 380 STPDFGLIKEMLEKVSEVNLHSDECVENAPDELKDSPRTFEA 505
           STP++          +E++    + V + P ELK SP  FE+
Sbjct: 370 STPEYDDTYMDSGYTNEIDFSFPDSVSDYPLELKGSPDGFES 411


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 216 TWTFFTKFTVGTLIKIY 166
           TW + T FTV  L+K++
Sbjct: 178 TWFWVTPFTVLPLLKVW 194


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 216 TWTFFTKFTVGTLIKIY 166
           TW + T FTV  L+K++
Sbjct: 178 TWFWVTPFTVLPLLKVW 194


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 148 QSSLS*KIPSTALSTRLYIAVCNDMYK 68
           Q+ LS  +    LSTRL+     D+YK
Sbjct: 266 QTGLSPYLRFGCLSTRLFYYQLTDLYK 292


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 587 QYLKWENQENALLK 628
           +Y+KW N+E  + K
Sbjct: 476 RYIKWTNRERGVFK 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,804
Number of Sequences: 438
Number of extensions: 3389
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)