Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0894
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger) pr...    31   0.65 
At2g17510.1 68415.m02025 ribonuclease II family protein similar ...    30   1.5  
At5g16740.1 68418.m01960 amino acid transporter family protein l...    29   2.6  
At1g11990.1 68414.m01385 expressed protein contains Pfam PF03138...    28   4.5  
At4g14650.1 68417.m02253 expressed protein                             27   7.9  
At2g34730.1 68415.m04265 myosin heavy chain-related low similari...    27   7.9  

>At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger)
           protein-related contains weak hit to Pfam profile:
           PF00097 zinc finger, C3HC4 type (RING finger); weak
           similarity to RING finger protein 8 (Swiss-Prot:O76064)
           [Homo sapiens]
          Length = 738

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = +2

Query: 410 MLEKVSEVNLHSDECVENAPDELKDSPRTFEATHVLKTQKHRLKRRRKTKEKNVM 574
           +LEK  ++NL  D+ V++AP+ELKD          ++  K +LK R+   +K  M
Sbjct: 373 VLEKFRDLNL--DDNVDSAPEELKDD-ALIGLLQQVQDLKKQLKERKDWAQKKAM 424


>At2g17510.1 68415.m02025 ribonuclease II family protein similar to
           SP|P37202 Mitotic control protein dis3
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF00773: RNB-like protein
          Length = 933

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 365 DGDVIST---PDFGLIKEMLEKVSEVNLHSDECVENAPDELKDSPRTFEATHVLKTQKH 532
           DGD+++    P      E    ++E +   D+ V  APD + D+PRT   +H     K+
Sbjct: 273 DGDIVAVELLPRDQWQDEKALSIAEEDDEEDDTVHLAPDNVDDAPRTSNLSHETSGDKN 331


>At5g16740.1 68418.m01960 amino acid transporter family protein low
           similarity to lysosomal amino acid transporter 1 [Rattus
           norvegicus] GI:14571904; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 426

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 268 YLALGSHKSRRIACLLVHLDIFYKIYSWNIN 176
           Y A G H  R I CL ++L+IF  + S+ I+
Sbjct: 101 YSAFGRH-GRLIVCLFIYLEIFMALVSYTIS 130


>At1g11990.1 68414.m01385 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.; expression supported by MPSS
          Length = 590

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 383 TPDFGLIKEMLEKVSEVNLHSDECVENAPDELKDSPRTFEATHVL 517
           +PD  ++KE+ +++  +NL     V    + +K++   F  TH+L
Sbjct: 254 SPDIRIVKELPKELQSLNLEEIGSVVTDIEVMKEAKPDFYMTHIL 298


>At4g14650.1 68417.m02253 expressed protein
          Length = 644

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 446 DECVENAPDELKDSPRTFEATHVLKTQKHRLKRRRKTKEK 565
           DE VEN P   +D    +EAT  ++ +   LKR    K +
Sbjct: 545 DESVENTPVLCEDKTEIYEATIDVEEKTVMLKRSESVKSR 584


>At2g34730.1 68415.m04265 myosin heavy chain-related low similarity
           to  SP|P14105 Myosin heavy chain, nonmuscle (Cellular
           myosin heavy chain) {Gallus gallus}
          Length = 825

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 401 IKEMLEKVSEVNLHSDECVENAPDELKDSPRTFEATHVLKTQKHRLKRRRKTKEKNV 571
           +KE  +K+ E+NLH  E       E+ D  R  E  H L       +   +T E N+
Sbjct: 545 VKEAHKKIVELNLHVTEKEGTLRSEMVDKERLKEEIHRLGCLVKEKENLVQTAENNL 601


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,835,103
Number of Sequences: 28952
Number of extensions: 247344
Number of successful extensions: 593
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)