Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0893
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    33   0.021
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    27   2.5  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   3.2  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   7.5  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   9.9  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.9  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   9.9  
SPBC83.17 |||transcriptional coactivator, multiprotein bridging ...    25   9.9  

>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 33.5 bits (73), Expect = 0.021
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 13  TRNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALR-RARPTRYGLMIPN 174
           ++NP  R +SR+       PP+SAP++  S +   P  A + R R  R+G+   N
Sbjct: 191 SKNPQNRSNSRSKQRNKNAPPKSAPSKRKSNILDDPIEAEKARKRAERFGVAAKN 245


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +3

Query: 210 CIGKTLQRHPFSGLVLRQVSRCTLLSGFRLPWPPSCCHERPTPFMVS 350
           C G  +    FS   LRQ+     +   R P   SC H    PF V+
Sbjct: 49  CKGSGMVADVFSQHQLRQLVGSMGIGHLRYPTAGSCAHSEAQPFYVN 95


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 397 QRQFCLPKLAHLAPSSDLRLHRS--SKAGVLT-HLKVLRIV*GRFGPNASNYSL 549
           + Q C+P  A + PSSD+   R   SK  V+  ++  L +     G N+ NYSL
Sbjct: 107 ENQDCVPLCASIIPSSDVSFIRDLISKNYVVNWNIDNLPVATYLEGTNSKNYSL 160


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 65  YYHQDLHRRRLQAGSRPDPSALSVAHVLL 151
           Y  +DL RR+LQ  S+P  S  + A V++
Sbjct: 191 YKSEDLKRRKLQPSSKPLSSLEARAKVIM 219


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 200 VTVVYRQNASAPSIFRAGSSAGE 268
           ++++   NAS+P+IF  G+ A E
Sbjct: 515 ISMMSNSNASSPAIFEVGAEAKE 537


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 363 LGALTLRLVHPTAPVLLTKIG 425
           +G   LR V+P +P+LLT  G
Sbjct: 323 IGHKELRFVYPISPILLTLAG 343


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 348 SHERFLGALTLRLVHPTAPVLLT 416
           +HE +  AL + L +P  P++LT
Sbjct: 4   NHEVYKDALPISLAYPLPPIILT 26


>SPBC83.17 |||transcriptional coactivator, multiprotein bridging
           factor Mbf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 131 RAQKGLGVSPLGASVGADLGGSSK 60
           + ++ LG+   G ++GA LGG  K
Sbjct: 124 KMERALGIKLRGQNIGAPLGGPKK 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,249
Number of Sequences: 5004
Number of extensions: 48668
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)