Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0893
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800...    31   0.62 
03_05_0543 - 25404630-25405408,25405461-25405605                       29   2.5  
01_01_0094 - 730484-731570,732030-732715                               28   4.4  
12_02_1002 + 25176434-25176501,25176613-25176859,25178106-251781...    28   5.8  
08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821           27   7.6  
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353...    27   7.6  
01_06_0956 - 33343503-33344086,33344225-33344384                       27   7.6  
01_01_0097 - 741881-742977,743100-743320,743438-744156                 27   7.6  

>04_01_0610 -
           7997406-7998047,7998379-7998426,8000719-8001143,
           8002301-8002589
          Length = 467

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 10  FTRNPSPRQSSRASLEYLLLPPRSAP--TEAPSGLTPRPFCALRRARP 147
           F +NP     SR  L  LLLPP   P   +AP    PRP+C     RP
Sbjct: 374 FLKNPD----SRRLLLLLLLPPPGPPPLAQAPPRHPPRPWCRPHTPRP 417


>03_05_0543 - 25404630-25405408,25405461-25405605
          Length = 307

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
 Frame = +1

Query: 22  PSPRQSSRASLEYLLLPP---RSAPTEAPSGLTP---RPFCALRRARP 147
           P PR+   A L  +  PP   R AP  AP+ LTP   + F A RR  P
Sbjct: 136 PEPRRPPAAPLPGVRTPPSPPRRAPAPAPAPLTPALSQRFLAERRPAP 183


>01_01_0094 - 730484-731570,732030-732715
          Length = 590

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 282 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 377
           + G +LP  P  C + P P +V   RF   LT
Sbjct: 552 VDGLQLPSRPFFCDDEPLPLLVDSYRFSSELT 583


>12_02_1002 +
           25176434-25176501,25176613-25176859,25178106-25178171,
           25178754-25178822,25179007-25179080,25180850-25180991,
           25181546-25181596,25181769-25181774
          Length = 240

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 94  PPSVQILVVVANTPARPW 41
           PPS  +LV+V   P RPW
Sbjct: 174 PPSSALLVIVEEGPTRPW 191


>08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821
          Length = 716

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 315 CCHERPTPFMVSHERFLGALTLRLVHPTAPVLLTKI 422
           C  E   PF   HE    ALTL +  PTA  L+ K+
Sbjct: 324 CIRELAVPFF-HHEVVKRALTLGMESPTAEALIVKL 358


>02_05_0568 -
          30034280-30034393,30034888-30035163,30035246-30035371,
          30035595-30035753,30035893-30036063,30036374-30036493,
          30036565-30036924,30038800-30039686,30039790-30040363,
          30041379-30041507,30042423-30042494,30042572-30042728,
          30042974-30043023,30043569-30044327
          Length = 1317

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 19 NPSPRQSSRASLEYLLLPPRSAPTEAP 99
          NP+P  S+   +  L  PP +AP  AP
Sbjct: 9  NPNPNPSTPFEVSMLFKPPSNAPAAAP 35


>01_06_0956 - 33343503-33344086,33344225-33344384
          Length = 247

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 22  PSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALRR 138
           PSPR   R +   + LPP  AP  +P+   P P    RR
Sbjct: 135 PSPRHKRRTAPAPMPLPPAQAPVWSPA---PAPAATQRR 170


>01_01_0097 - 741881-742977,743100-743320,743438-744156
          Length = 678

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 282 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 377
           + G +LP  P  C + P P +V   RF   LT
Sbjct: 640 VGGLQLPSRPFFCDDEPLPLLVDSCRFSSELT 671


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,093,174
Number of Sequences: 37544
Number of extensions: 399809
Number of successful extensions: 1302
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)