Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0893
         (556 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089503-1|AAL90241.1|  625|Drosophila melanogaster GH13327p pro...    29   5.6  
AE014297-4778|AAN14281.1| 1121|Drosophila melanogaster CG1815-PB...    29   5.6  
AE014134-3228|AAN11072.2|  625|Drosophila melanogaster CG10076-P...    29   5.6  

>AY089503-1|AAL90241.1|  625|Drosophila melanogaster GH13327p
           protein.
          Length = 625

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 25/110 (22%), Positives = 45/110 (40%)
 Frame = +1

Query: 13  TRNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALRRARPTRYGLMIPN*KFSIT 192
           T  P+P+ SS   L+     PR+AP  + S   P P    +  +  R   ++P+   +++
Sbjct: 51  TSTPNPQTSSDQDLDQPQPTPRAAPRASASNNPPTP----KPRQAIRSSKVLPSANSTLS 106

Query: 193 RAGNGSV*AKRFSAIHFQGWFFGR*VVAHSLADSDFHGHRPAVMSDQRLS 342
           R+    +    FS       F+    ++ S + +  H H P      R S
Sbjct: 107 RSRQRLI-KVDFSKFQDDDLFYDENSISSSHSTAATHQHHPHFAEMHRCS 155


>AE014297-4778|AAN14281.1| 1121|Drosophila melanogaster CG1815-PB,
            isoform B protein.
          Length = 1121

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 297  LPWPPSCCHERPTPFMVSHERFLGALTLRLVHPTAPVLLTK 419
            +P PP       +P      RF+G  T++ V+P  P+ LT+
Sbjct: 1012 MPPPPPLPPREESPATADSVRFVGDTTIQRVYPRHPLQLTR 1052


>AE014134-3228|AAN11072.2|  625|Drosophila melanogaster CG10076-PC,
           isoform C protein.
          Length = 625

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 25/110 (22%), Positives = 45/110 (40%)
 Frame = +1

Query: 13  TRNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALRRARPTRYGLMIPN*KFSIT 192
           T  P+P+ SS   L+     PR+AP  + S   P P    +  +  R   ++P+   +++
Sbjct: 51  TSTPNPQTSSDQDLDQPQPTPRAAPRASASNNPPTP----KPRQAIRSSKVLPSANSTLS 106

Query: 193 RAGNGSV*AKRFSAIHFQGWFFGR*VVAHSLADSDFHGHRPAVMSDQRLS 342
           R+    +    FS       F+    ++ S + +  H H P      R S
Sbjct: 107 RSRQRLI-KVDFSKFQDDDLFYDENSISSSHSTAATHQHHPHFAEMHRCS 155


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,340,292
Number of Sequences: 53049
Number of extensions: 612446
Number of successful extensions: 1806
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1806
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2131214097
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)