BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0893 (556 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z67995-1|CAA91943.1| 279|Caenorhabditis elegans Hypothetical pr... 29 3.0 Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical pr... 27 9.1 Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical pr... 27 9.1 Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical pr... 27 9.1 Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical pr... 27 9.1 U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 27 9.1 >Z67995-1|CAA91943.1| 279|Caenorhabditis elegans Hypothetical protein M153.1 protein. Length = 279 Score = 28.7 bits (61), Expect = 3.0 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = +2 Query: 125 ALSVAHVLLVTA**YQIKNLASHVPV-TVVYRQNASAPSIFRAGSSA 262 ALS H+++ A I+N+ S +P + V R + PS+ RAG+SA Sbjct: 85 ALSKEHLVVSIALGITIRNIESLLPTKSRVVRVMPNTPSVVRAGASA 131 >Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical protein Y57G11C.9b protein. Length = 625 Score = 27.1 bits (57), Expect = 9.1 Identities = 11/35 (31%), Positives = 18/35 (51%) Frame = +1 Query: 16 RNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRP 120 R P++S + L + LPP++ +PS P P Sbjct: 278 RETQPKKSVKEELPQIPLPPKTEAAASPSPAPPTP 312 >Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical protein Y57G11C.9a protein. Length = 553 Score = 27.1 bits (57), Expect = 9.1 Identities = 11/35 (31%), Positives = 18/35 (51%) Frame = +1 Query: 16 RNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRP 120 R P++S + L + LPP++ +PS P P Sbjct: 278 RETQPKKSVKEELPQIPLPPKTEAAASPSPAPPTP 312 >Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical protein E02A10.1 protein. Length = 418 Score = 27.1 bits (57), Expect = 9.1 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = -1 Query: 352 WDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRRTSP 245 W T+ V +S Q+ G +R P+R + R +SP Sbjct: 9 WKTLTSVSKSGQKKGRRNTRQPVRPLNRFYRIGSSP 44 >Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical protein E02A10.1 protein. Length = 418 Score = 27.1 bits (57), Expect = 9.1 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = -1 Query: 352 WDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRRTSP 245 W T+ V +S Q+ G +R P+R + R +SP Sbjct: 9 WKTLTSVSKSGQKKGRRNTRQPVRPLNRFYRIGSSP 44 >U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd related) protein 6 protein. Length = 240 Score = 27.1 bits (57), Expect = 9.1 Identities = 12/34 (35%), Positives = 14/34 (41%) Frame = +1 Query: 70 PPRSAPTEAPSGLTPRPFCALRRARPTRYGLMIP 171 PP P P PRP C RP+ Y +P Sbjct: 75 PPPPMPCPPPPPPMPRPSCPCMMQRPSFYPSYVP 108 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,402,752 Number of Sequences: 27780 Number of extensions: 287930 Number of successful extensions: 723 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 681 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 723 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1134321766 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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