Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0893
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67995-1|CAA91943.1|  279|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    27   9.1  

>Z67995-1|CAA91943.1|  279|Caenorhabditis elegans Hypothetical
           protein M153.1 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 125 ALSVAHVLLVTA**YQIKNLASHVPV-TVVYRQNASAPSIFRAGSSA 262
           ALS  H+++  A    I+N+ S +P  + V R   + PS+ RAG+SA
Sbjct: 85  ALSKEHLVVSIALGITIRNIESLLPTKSRVVRVMPNTPSVVRAGASA 131


>Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9b protein.
          Length = 625

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 16  RNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRP 120
           R   P++S +  L  + LPP++    +PS   P P
Sbjct: 278 RETQPKKSVKEELPQIPLPPKTEAAASPSPAPPTP 312


>Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9a protein.
          Length = 553

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 16  RNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRP 120
           R   P++S +  L  + LPP++    +PS   P P
Sbjct: 278 RETQPKKSVKEELPQIPLPPKTEAAASPSPAPPTP 312


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 352 WDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRRTSP 245
           W T+  V +S Q+ G   +R P+R + R     +SP
Sbjct: 9   WKTLTSVSKSGQKKGRRNTRQPVRPLNRFYRIGSSP 44


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 352 WDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRRTSP 245
           W T+  V +S Q+ G   +R P+R + R     +SP
Sbjct: 9   WKTLTSVSKSGQKKGRRNTRQPVRPLNRFYRIGSSP 44


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +1

Query: 70  PPRSAPTEAPSGLTPRPFCALRRARPTRYGLMIP 171
           PP   P   P    PRP C     RP+ Y   +P
Sbjct: 75  PPPPMPCPPPPPPMPRPSCPCMMQRPSFYPSYVP 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,402,752
Number of Sequences: 27780
Number of extensions: 287930
Number of successful extensions: 723
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)