Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0893
(556 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 32 0.30
At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY) domain-c... 30 0.90
At1g48960.1 68414.m05487 universal stress protein (USP) family p... 28 3.6
At2g27810.2 68415.m03372 xanthine/uracil permease family protein... 28 4.8
At2g27810.1 68415.m03371 xanthine/uracil permease family protein... 28 4.8
At2g23340.1 68415.m02787 AP2 domain-containing transcription fac... 28 4.8
At1g31250.1 68414.m03825 proline-rich family protein contains pr... 28 4.8
At4g21990.1 68417.m03183 5'-adenylylsulfate reductase (APR3) / P... 27 8.4
At4g04610.1 68417.m00674 5'-adenylylsulfate reductase (APR1) / P... 27 8.4
At3g62270.1 68416.m06996 anion exchange family protein contains ... 27 8.4
At3g60320.1 68416.m06742 expressed protein contains Pfam profile... 27 8.4
At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2, chlorop... 27 8.4
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 31.9 bits (69), Expect = 0.30
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -2
Query: 204 VTGTCDAKFLIW-YH*AVTSRTCATESAEGSG 112
VTG+ D+ L+W H A TSRT +E + GSG
Sbjct: 2684 VTGSRDSTVLLWRIHKAFTSRTSVSEPSTGSG 2715
>At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY)
domain-containing protein low similarity to DEAD box
protein DDX1 [Gallus gallus] GI:16323037, ryanodine
receptor [Caenorhabditis elegans] GI:1871447; contains
Pfam profile PF00622: SPRY domain
Length = 509
Score = 30.3 bits (65), Expect = 0.90
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +1
Query: 370 P*HYVWFIPQRQFCLPKLAH----LAPSSDLRLHRSSKAGVLTHLKVLRIV*GRFGPNAS 537
P HYV++ QR C P + P S++ K GV IV GR+ P AS
Sbjct: 395 PPHYVFYKGQRYICAPDAKEEPPKVVPGSEISFF---KNGVCQGAAFTDIVGGRYYPAAS 451
Query: 538 NYSL 549
Y+L
Sbjct: 452 MYTL 455
>At1g48960.1 68414.m05487 universal stress protein (USP) family
protein contains Pfam PF00582: universal stress protein
family; similar to hypothetical protein GI:7770340 from
[Arabidopsis thaliana]
Length = 219
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 40 SRASLEYLLLPPRSAPTEAPSGLTPRPFCALRRARPTR 153
S+ + L +P PT+ P L P P L R RP R
Sbjct: 172 SQIEISGLQVPEIPTPTKVPYRLCPSPHAILWRTRPRR 209
>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 660
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 367 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 266
P KR D+ VGRS DG +GS +P+R R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147
>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 709
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 367 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 266
P KR D+ VGRS DG +GS +P+R R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147
>At2g23340.1 68415.m02787 AP2 domain-containing transcription
factor, putative
Length = 176
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 137 RRRAQKGLGVSPLGASVGADLGGSSKYSSEALED*RGEG 21
R+ A+ G V LGA+V + GG ++ E +E+ R G
Sbjct: 109 RKAAEVGAQVDALGATVVVNTGGENRGDYEKIENCRKSG 147
>At1g31250.1 68414.m03825 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
similar to prolin rich protein GB:S44189 GI:433706 from
[Zea mays]
Length = 165
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 28 PRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALRRARPTRYGLMIP 171
P + AS L PP ++P+ P+G TP +L P+ IP
Sbjct: 109 PAGTPNASPSVKLTPPYASPSVRPTGTTPNASPSLTPPNPSPSEKFIP 156
>At4g21990.1 68417.m03183 5'-adenylylsulfate reductase (APR3) / PAPS
reductase homolog (PRH26) identical to
5'-adenylylsulfate reductase [Arabidopsis thaliana]
GI:2738760; identical to cDNA PAPS reductase homolog
(PRH26) GI:1710113
Length = 458
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 356 LMGHHERRWSLMTAGRWPWKSESAKEC 276
L G HER GRW W+ AKEC
Sbjct: 294 LPGQHERE------GRWWWEDAKAKEC 314
>At4g04610.1 68417.m00674 5'-adenylylsulfate reductase (APR1) / PAPS
reductase homolog (PRH19) identical to
5'-adenylylsulfate reductase [Arabidopsis thaliana]
GI:2738756; identical to cDNA PAPS reductase homolog
(PRH19) GI:1710111
Length = 465
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 356 LMGHHERRWSLMTAGRWPWKSESAKEC 276
L G HER GRW W+ AKEC
Sbjct: 302 LPGQHERE------GRWWWEDAKAKEC 322
>At3g62270.1 68416.m06996 anion exchange family protein contains
similarity to anion exchanger 3, cardiac splice form -
Rattus norvegicus, PIR:A42497
Length = 703
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 337 LSWCPMSVF*AP*HYVWFIPQRQFCLPKLAHLAPSSDLRLHRSSKAGVLT-HLKV 498
L+W P++ P ++ IP RQ+ LP+ A DL +A L HL V
Sbjct: 560 LTWIPIAGVMFPLLIMFLIPVRQYILPRFFKSAHLQDLDAAEYEEAPALPFHLAV 614
>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
PF04782: protein of unknown function (DUF632), PF04783:
protein of unknown function (DUF630)
Length = 796
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 7 LFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTP 114
+F P P S ++ +++ PPR +P+ APS + P
Sbjct: 70 VFLHTPPPPLSEQSPAKFV--PPRFSPSPAPSSVYP 103
>At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2,
chloroplast (APR2) (APSR) / adenosine 5'-phosphosulfate
5'-adenylylsulfate (APS) sulfotransferase 2 /
3'-phosphoadenosine-5'-phosphosulfate (PAPS) reductase
homolog 43 (PRH-43) identical to SP|P92981
5'-adenylylsulfate reductase 2, chloroplast precursor
(EC 1.8.4.9) (Adenosine 5'-phosphosulfate
5'-adenylylsulfate sulfotransferase 2) (APS
sulfotransferase 2) (Thioredoxin independent APS
reductase 2) (3'-phosphoadenosine-5'-phosphosulfate
reductase homolog 43) (PAPS reductase homolog 43)
(Prh-43) {Arabidopsis thaliana}; identical to cDNA PAPS
reductase homolog (PRH43) GI:1710115
Length = 454
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 356 LMGHHERRWSLMTAGRWPWKSESAKEC 276
L G HER GRW W+ AKEC
Sbjct: 294 LPGQHERE------GRWWWEDAKAKEC 314
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,924,257
Number of Sequences: 28952
Number of extensions: 282336
Number of successful extensions: 753
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -